Hb_025615_010

Information

Type -
Description -
Location Contig25615: 6987-10127
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39270g
description hypothetical protein
nr
ID KDP27663.1
description hypothetical protein JCGZ_19555 [Jatropha curcas]
swissprot
ID Q9LPG3
description Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1
trembl
ID A0A067JXY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19555 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26717: 7993-8155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025615_010 0.0 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
2 Hb_187021_010 0.1914291502 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_001688_070 0.2125406047 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X1 [Jatropha curcas]
4 Hb_003544_040 0.2201156366 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
5 Hb_066531_010 0.2256275204 - - ccd1, putative [Ricinus communis]
6 Hb_000567_350 0.2390390031 - - PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]
7 Hb_008112_010 0.2396140963 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
8 Hb_000011_070 0.2412874587 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
9 Hb_008119_030 0.2424039306 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
10 Hb_002903_100 0.2432674829 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
11 Hb_005348_150 0.2457597362 - - PREDICTED: actin-100-like [Jatropha curcas]
12 Hb_003159_150 0.2465913934 - - PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
13 Hb_083493_010 0.2482504361 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_009808_010 0.248413004 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
15 Hb_000191_050 0.2488115158 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
16 Hb_003849_190 0.2505242574 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
17 Hb_000637_020 0.2513159621 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
18 Hb_000365_280 0.2515531 - - calcium binding protein/cast, putative [Ricinus communis]
19 Hb_000914_050 0.2531713962 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
20 Hb_005276_030 0.2551030585 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_025615_010 Hb_025615_010 Hb_187021_010 Hb_187021_010 Hb_025615_010--Hb_187021_010 Hb_001688_070 Hb_001688_070 Hb_025615_010--Hb_001688_070 Hb_003544_040 Hb_003544_040 Hb_025615_010--Hb_003544_040 Hb_066531_010 Hb_066531_010 Hb_025615_010--Hb_066531_010 Hb_000567_350 Hb_000567_350 Hb_025615_010--Hb_000567_350 Hb_008112_010 Hb_008112_010 Hb_025615_010--Hb_008112_010 Hb_083493_010 Hb_083493_010 Hb_187021_010--Hb_083493_010 Hb_035761_010 Hb_035761_010 Hb_187021_010--Hb_035761_010 Hb_000422_130 Hb_000422_130 Hb_187021_010--Hb_000422_130 Hb_187021_010--Hb_001688_070 Hb_000099_190 Hb_000099_190 Hb_187021_010--Hb_000099_190 Hb_005016_020 Hb_005016_020 Hb_187021_010--Hb_005016_020 Hb_001688_070--Hb_083493_010 Hb_000062_490 Hb_000062_490 Hb_001688_070--Hb_000062_490 Hb_001688_070--Hb_000567_350 Hb_001688_070--Hb_008112_010 Hb_012743_010 Hb_012743_010 Hb_001688_070--Hb_012743_010 Hb_003544_040--Hb_187021_010 Hb_020967_010 Hb_020967_010 Hb_003544_040--Hb_020967_010 Hb_186647_010 Hb_186647_010 Hb_003544_040--Hb_186647_010 Hb_049915_010 Hb_049915_010 Hb_003544_040--Hb_049915_010 Hb_000532_150 Hb_000532_150 Hb_003544_040--Hb_000532_150 Hb_000637_020 Hb_000637_020 Hb_066531_010--Hb_000637_020 Hb_000020_100 Hb_000020_100 Hb_066531_010--Hb_000020_100 Hb_001269_090 Hb_001269_090 Hb_066531_010--Hb_001269_090 Hb_004994_250 Hb_004994_250 Hb_066531_010--Hb_004994_250 Hb_000107_260 Hb_000107_260 Hb_066531_010--Hb_000107_260 Hb_000094_250 Hb_000094_250 Hb_000567_350--Hb_000094_250 Hb_003449_030 Hb_003449_030 Hb_000567_350--Hb_003449_030 Hb_000567_350--Hb_000062_490 Hb_000094_120 Hb_000094_120 Hb_000567_350--Hb_000094_120 Hb_000735_140 Hb_000735_140 Hb_000567_350--Hb_000735_140 Hb_000009_200 Hb_000009_200 Hb_008112_010--Hb_000009_200 Hb_056196_060 Hb_056196_060 Hb_008112_010--Hb_056196_060 Hb_005714_100 Hb_005714_100 Hb_008112_010--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_008112_010--Hb_000035_050 Hb_001085_300 Hb_001085_300 Hb_008112_010--Hb_001085_300 Hb_008112_010--Hb_000735_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81572 2.48293 2.83056 5.3669 0.0479013 0.265969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0757032 0.0595687 1.21911 0.325411 0.885025

CAGE analysis