Hb_000567_350

Information

Type -
Description -
Location Contig567: 395355-397037
Sequence    

Annotation

kegg
ID pop:POPTR_0015s12700g
description POPTRDRAFT_575865; hypothetical protein
nr
ID XP_012070190.1
description PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]
swissprot
ID Q9FFE6
description Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1
trembl
ID A0A067L6T7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03925 PE=4 SV=1
Gene Ontology
ID GO:0008756
description probable acyl-activating enzyme 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49156: 395858-396692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_350 0.0 - - PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]
2 Hb_000094_250 0.1535145063 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
3 Hb_003449_030 0.1771663888 - - PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Camelina sativa]
4 Hb_000062_490 0.1776103288 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
5 Hb_000094_120 0.1785822314 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
6 Hb_000735_140 0.1795100077 - - 3-glucanase family protein [Populus trichocarpa]
7 Hb_001688_070 0.1807798903 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X1 [Jatropha curcas]
8 Hb_012727_010 0.1844135064 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_005016_020 0.1850973204 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
10 Hb_002000_090 0.1878144541 - - 60S ribosomal protein L3B [Hevea brasiliensis]
11 Hb_009745_010 0.1918197949 - - cellulose synthase-like protein [Populus tomentosa]
12 Hb_001226_170 0.1923765781 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
13 Hb_001353_020 0.1986133016 - - conserved hypothetical protein [Ricinus communis]
14 Hb_048476_040 0.1993339476 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
15 Hb_008112_010 0.1998988449 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
16 Hb_002284_080 0.1998995129 - - protein with unknown function [Ricinus communis]
17 Hb_001898_020 0.2000158688 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
18 Hb_000207_290 0.2017682482 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
19 Hb_002035_030 0.2035894104 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
20 Hb_052117_010 0.2037144543 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000567_350 Hb_000567_350 Hb_000094_250 Hb_000094_250 Hb_000567_350--Hb_000094_250 Hb_003449_030 Hb_003449_030 Hb_000567_350--Hb_003449_030 Hb_000062_490 Hb_000062_490 Hb_000567_350--Hb_000062_490 Hb_000094_120 Hb_000094_120 Hb_000567_350--Hb_000094_120 Hb_000735_140 Hb_000735_140 Hb_000567_350--Hb_000735_140 Hb_001688_070 Hb_001688_070 Hb_000567_350--Hb_001688_070 Hb_000009_140 Hb_000009_140 Hb_000094_250--Hb_000009_140 Hb_033234_010 Hb_033234_010 Hb_000094_250--Hb_033234_010 Hb_000094_250--Hb_000062_490 Hb_000094_250--Hb_000094_120 Hb_000120_310 Hb_000120_310 Hb_000094_250--Hb_000120_310 Hb_001123_190 Hb_001123_190 Hb_000094_250--Hb_001123_190 Hb_017857_010 Hb_017857_010 Hb_003449_030--Hb_017857_010 Hb_006615_160 Hb_006615_160 Hb_003449_030--Hb_006615_160 Hb_012743_010 Hb_012743_010 Hb_003449_030--Hb_012743_010 Hb_003449_030--Hb_000062_490 Hb_032050_070 Hb_032050_070 Hb_003449_030--Hb_032050_070 Hb_000692_030 Hb_000692_030 Hb_000062_490--Hb_000692_030 Hb_012727_010 Hb_012727_010 Hb_000062_490--Hb_012727_010 Hb_000062_490--Hb_000094_120 Hb_001178_080 Hb_001178_080 Hb_000062_490--Hb_001178_080 Hb_000062_490--Hb_006615_160 Hb_068576_010 Hb_068576_010 Hb_000094_120--Hb_068576_010 Hb_002030_180 Hb_002030_180 Hb_000094_120--Hb_002030_180 Hb_000094_120--Hb_006615_160 Hb_005539_260 Hb_005539_260 Hb_000094_120--Hb_005539_260 Hb_002849_070 Hb_002849_070 Hb_000735_140--Hb_002849_070 Hb_003849_190 Hb_003849_190 Hb_000735_140--Hb_003849_190 Hb_143766_030 Hb_143766_030 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000056_080 Hb_000056_080 Hb_000735_140--Hb_000056_080 Hb_083493_010 Hb_083493_010 Hb_001688_070--Hb_083493_010 Hb_001688_070--Hb_000062_490 Hb_008112_010 Hb_008112_010 Hb_001688_070--Hb_008112_010 Hb_187021_010 Hb_187021_010 Hb_001688_070--Hb_187021_010 Hb_001688_070--Hb_012743_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50578 6.1644 3.29399 5.93074 0.146471 0.0843369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0821489 0.0215442 1.38189 2.78218 1.99207

CAGE analysis