Hb_066531_010

Information

Type -
Description -
Location Contig66531: 1219-1560
Sequence    

Annotation

kegg
ID rcu:RCOM_1096900
description ccd1, putative
nr
ID XP_002524717.1
description ccd1, putative [Ricinus communis]
swissprot
ID Q9LSQ6
description Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1
trembl
ID B9SFE8
description Ccd1, putative OS=Ricinus communis GN=RCOM_1096900 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein pbp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53235: 1439-1626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066531_010 0.0 - - ccd1, putative [Ricinus communis]
2 Hb_025615_010 0.2256275204 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
3 Hb_000637_020 0.2304640112 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
4 Hb_000020_100 0.230933443 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
5 Hb_001269_090 0.2316626229 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
6 Hb_004994_250 0.2368707349 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
7 Hb_000107_260 0.2418853875 - - -
8 Hb_007163_050 0.2431404047 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
9 Hb_003531_040 0.2450363026 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_002903_100 0.2474941523 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
11 Hb_031022_020 0.249870404 - - -
12 Hb_003544_040 0.2504791619 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
13 Hb_015807_030 0.2536447609 - - PREDICTED: protein NDR1-like [Jatropha curcas]
14 Hb_000532_150 0.2539794368 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
15 Hb_009808_010 0.2573202098 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
16 Hb_002173_030 0.2574289107 - - hypothetical protein JCGZ_12466 [Jatropha curcas]
17 Hb_000191_050 0.2579693082 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
18 Hb_002026_050 0.2622476072 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
19 Hb_009557_050 0.2640896097 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
20 Hb_003849_190 0.2656682801 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]

Gene co-expression network

sample Hb_066531_010 Hb_066531_010 Hb_025615_010 Hb_025615_010 Hb_066531_010--Hb_025615_010 Hb_000637_020 Hb_000637_020 Hb_066531_010--Hb_000637_020 Hb_000020_100 Hb_000020_100 Hb_066531_010--Hb_000020_100 Hb_001269_090 Hb_001269_090 Hb_066531_010--Hb_001269_090 Hb_004994_250 Hb_004994_250 Hb_066531_010--Hb_004994_250 Hb_000107_260 Hb_000107_260 Hb_066531_010--Hb_000107_260 Hb_187021_010 Hb_187021_010 Hb_025615_010--Hb_187021_010 Hb_001688_070 Hb_001688_070 Hb_025615_010--Hb_001688_070 Hb_003544_040 Hb_003544_040 Hb_025615_010--Hb_003544_040 Hb_000567_350 Hb_000567_350 Hb_025615_010--Hb_000567_350 Hb_008112_010 Hb_008112_010 Hb_025615_010--Hb_008112_010 Hb_084849_010 Hb_084849_010 Hb_000637_020--Hb_084849_010 Hb_001135_030 Hb_001135_030 Hb_000637_020--Hb_001135_030 Hb_000191_050 Hb_000191_050 Hb_000637_020--Hb_000191_050 Hb_013358_020 Hb_013358_020 Hb_000637_020--Hb_013358_020 Hb_000035_050 Hb_000035_050 Hb_000637_020--Hb_000035_050 Hb_002374_270 Hb_002374_270 Hb_000637_020--Hb_002374_270 Hb_031022_020 Hb_031022_020 Hb_000020_100--Hb_031022_020 Hb_000020_100--Hb_000637_020 Hb_000020_100--Hb_084849_010 Hb_002026_050 Hb_002026_050 Hb_000020_100--Hb_002026_050 Hb_002078_290 Hb_002078_290 Hb_000020_100--Hb_002078_290 Hb_118939_010 Hb_118939_010 Hb_000020_100--Hb_118939_010 Hb_000532_150 Hb_000532_150 Hb_001269_090--Hb_000532_150 Hb_007163_050 Hb_007163_050 Hb_001269_090--Hb_007163_050 Hb_049915_010 Hb_049915_010 Hb_001269_090--Hb_049915_010 Hb_023768_010 Hb_023768_010 Hb_001269_090--Hb_023768_010 Hb_007749_020 Hb_007749_020 Hb_001269_090--Hb_007749_020 Hb_001357_280 Hb_001357_280 Hb_001269_090--Hb_001357_280 Hb_031822_010 Hb_031822_010 Hb_004994_250--Hb_031822_010 Hb_004631_200 Hb_004631_200 Hb_004994_250--Hb_004631_200 Hb_000072_190 Hb_000072_190 Hb_004994_250--Hb_000072_190 Hb_001769_110 Hb_001769_110 Hb_004994_250--Hb_001769_110 Hb_000003_240 Hb_000003_240 Hb_004994_250--Hb_000003_240 Hb_004994_250--Hb_013358_020 Hb_000977_200 Hb_000977_200 Hb_000107_260--Hb_000977_200 Hb_000816_190 Hb_000816_190 Hb_000107_260--Hb_000816_190 Hb_001514_250 Hb_001514_250 Hb_000107_260--Hb_001514_250 Hb_008119_030 Hb_008119_030 Hb_000107_260--Hb_008119_030 Hb_000191_140 Hb_000191_140 Hb_000107_260--Hb_000191_140 Hb_000107_260--Hb_118939_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53573 4.62931 3.84565 9.60073 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3746 0.648312 0.980416 0.0966184 0.714096

CAGE analysis