Hb_000977_200

Information

Type -
Description -
Location Contig977: 175378-176916
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18660g
description POPTRDRAFT_770126; hypothetical protein
nr
ID XP_012085823.1
description PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9M879
description Acyl-[acyl-carrier-protein] desaturase 5, chloroplastic OS=Arabidopsis thaliana GN=S-ACP-DES5 PE=1 SV=1
trembl
ID E6NU42
description JHL23J11.7 protein OS=Jatropha curcas GN=JHL23J11.7 PE=4 SV=1
Gene Ontology
ID GO:0009507
description acyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_200 0.0 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
2 Hb_000107_260 0.1480358395 - - -
3 Hb_003086_160 0.1836001125 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
4 Hb_012286_060 0.1906078387 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
5 Hb_014705_010 0.197604329 - - hypothetical protein JCGZ_21106 [Jatropha curcas]
6 Hb_000191_140 0.2000601073 - - PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
7 Hb_000816_190 0.2017383233 - - conserved hypothetical protein [Ricinus communis]
8 Hb_118939_010 0.2053539272 - - protein binding protein, putative [Ricinus communis]
9 Hb_008119_030 0.2056149176 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
10 Hb_054865_160 0.2102565034 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
11 Hb_000200_070 0.2146380109 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
12 Hb_001621_120 0.2164931985 - - Zeamatin precursor, putative [Ricinus communis]
13 Hb_003688_010 0.2169747692 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
14 Hb_033720_030 0.2174741899 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
15 Hb_000635_020 0.2198791954 - - conserved hypothetical protein [Ricinus communis]
16 Hb_107658_010 0.2228493355 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
17 Hb_007290_040 0.2237930125 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]
18 Hb_000963_050 0.2242297774 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
19 Hb_002490_030 0.2248918636 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005348_150 0.2268700641 - - PREDICTED: actin-100-like [Jatropha curcas]

Gene co-expression network

sample Hb_000977_200 Hb_000977_200 Hb_000107_260 Hb_000107_260 Hb_000977_200--Hb_000107_260 Hb_003086_160 Hb_003086_160 Hb_000977_200--Hb_003086_160 Hb_012286_060 Hb_012286_060 Hb_000977_200--Hb_012286_060 Hb_014705_010 Hb_014705_010 Hb_000977_200--Hb_014705_010 Hb_000191_140 Hb_000191_140 Hb_000977_200--Hb_000191_140 Hb_000816_190 Hb_000816_190 Hb_000977_200--Hb_000816_190 Hb_000107_260--Hb_000816_190 Hb_001514_250 Hb_001514_250 Hb_000107_260--Hb_001514_250 Hb_008119_030 Hb_008119_030 Hb_000107_260--Hb_008119_030 Hb_000107_260--Hb_000191_140 Hb_118939_010 Hb_118939_010 Hb_000107_260--Hb_118939_010 Hb_002267_060 Hb_002267_060 Hb_003086_160--Hb_002267_060 Hb_033720_030 Hb_033720_030 Hb_003086_160--Hb_033720_030 Hb_000321_170 Hb_000321_170 Hb_003086_160--Hb_000321_170 Hb_000022_080 Hb_000022_080 Hb_003086_160--Hb_000022_080 Hb_003086_160--Hb_012286_060 Hb_028487_060 Hb_028487_060 Hb_003086_160--Hb_028487_060 Hb_000030_020 Hb_000030_020 Hb_012286_060--Hb_000030_020 Hb_000963_050 Hb_000963_050 Hb_012286_060--Hb_000963_050 Hb_005348_150 Hb_005348_150 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_012286_060--Hb_118939_010 Hb_143629_120 Hb_143629_120 Hb_012286_060--Hb_143629_120 Hb_014705_010--Hb_003086_160 Hb_014705_010--Hb_033720_030 Hb_011861_130 Hb_011861_130 Hb_014705_010--Hb_011861_130 Hb_014705_010--Hb_000022_080 Hb_004195_070 Hb_004195_070 Hb_014705_010--Hb_004195_070 Hb_107658_010 Hb_107658_010 Hb_014705_010--Hb_107658_010 Hb_118283_010 Hb_118283_010 Hb_000191_140--Hb_118283_010 Hb_001195_130 Hb_001195_130 Hb_000191_140--Hb_001195_130 Hb_005144_170 Hb_005144_170 Hb_000191_140--Hb_005144_170 Hb_017439_010 Hb_017439_010 Hb_000191_140--Hb_017439_010 Hb_000191_140--Hb_012286_060 Hb_000932_050 Hb_000932_050 Hb_000191_140--Hb_000932_050 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_000816_190--Hb_008119_030 Hb_001366_170 Hb_001366_170 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.352088 0.216651 1.51275 3.08501 0.293976 0.111265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0413119 0.0974887 0.0604045 0.0130213 0.268781

CAGE analysis