Hb_002078_290

Information

Type -
Description -
Location Contig2078: 214829-215122
Sequence    

Annotation

kegg
ID vvi:100852520
description uncharacterized LOC100852520
nr
ID XP_003631355.1
description PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HGA7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=1
Gene Ontology
ID GO:0031072
description chaperone protein dnaj-related

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21452: 214617-215185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_290 0.0 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
2 Hb_000077_160 0.1384697481 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
3 Hb_003849_190 0.1456530532 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
4 Hb_000028_430 0.1594758138 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
5 Hb_031022_020 0.1610525219 - - -
6 Hb_084849_010 0.1626285407 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004218_120 0.1642990361 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
8 Hb_002450_030 0.164630657 - - ATPP2-A13, putative [Ricinus communis]
9 Hb_002759_260 0.1675143919 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
10 Hb_000191_050 0.1681117249 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
11 Hb_002325_060 0.1682640248 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
12 Hb_000020_100 0.1738974299 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
13 Hb_002217_500 0.1766483731 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
14 Hb_005054_020 0.1789544341 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
15 Hb_002875_070 0.1800455487 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
16 Hb_000879_150 0.1826307173 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023344_110 0.1827064115 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
18 Hb_000177_110 0.1838732506 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
19 Hb_000424_030 0.186672569 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000637_020 0.1868944826 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_290 Hb_002078_290 Hb_000077_160 Hb_000077_160 Hb_002078_290--Hb_000077_160 Hb_003849_190 Hb_003849_190 Hb_002078_290--Hb_003849_190 Hb_000028_430 Hb_000028_430 Hb_002078_290--Hb_000028_430 Hb_031022_020 Hb_031022_020 Hb_002078_290--Hb_031022_020 Hb_084849_010 Hb_084849_010 Hb_002078_290--Hb_084849_010 Hb_004218_120 Hb_004218_120 Hb_002078_290--Hb_004218_120 Hb_000923_100 Hb_000923_100 Hb_000077_160--Hb_000923_100 Hb_000371_120 Hb_000371_120 Hb_000077_160--Hb_000371_120 Hb_000077_160--Hb_003849_190 Hb_000077_160--Hb_000028_430 Hb_000110_260 Hb_000110_260 Hb_000077_160--Hb_000110_260 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_023344_110 Hb_023344_110 Hb_003849_190--Hb_023344_110 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_005054_020 Hb_005054_020 Hb_000028_430--Hb_005054_020 Hb_001250_080 Hb_001250_080 Hb_000028_430--Hb_001250_080 Hb_000227_280 Hb_000227_280 Hb_000028_430--Hb_000227_280 Hb_000928_120 Hb_000928_120 Hb_000028_430--Hb_000928_120 Hb_003001_130 Hb_003001_130 Hb_000028_430--Hb_003001_130 Hb_000028_430--Hb_003849_190 Hb_000020_100 Hb_000020_100 Hb_031022_020--Hb_000020_100 Hb_031022_020--Hb_000077_160 Hb_007044_090 Hb_007044_090 Hb_031022_020--Hb_007044_090 Hb_031022_020--Hb_003849_190 Hb_002374_270 Hb_002374_270 Hb_031022_020--Hb_002374_270 Hb_013358_020 Hb_013358_020 Hb_084849_010--Hb_013358_020 Hb_000637_020 Hb_000637_020 Hb_084849_010--Hb_000637_020 Hb_000072_190 Hb_000072_190 Hb_084849_010--Hb_000072_190 Hb_000035_050 Hb_000035_050 Hb_084849_010--Hb_000035_050 Hb_084849_010--Hb_002450_030 Hb_000749_070 Hb_000749_070 Hb_084849_010--Hb_000749_070 Hb_000203_270 Hb_000203_270 Hb_004218_120--Hb_000203_270 Hb_002325_060 Hb_002325_060 Hb_004218_120--Hb_002325_060 Hb_001135_030 Hb_001135_030 Hb_004218_120--Hb_001135_030 Hb_002849_070 Hb_002849_070 Hb_004218_120--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_004218_120--Hb_000200_170 Hb_002876_210 Hb_002876_210 Hb_004218_120--Hb_002876_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.3714 399.493 285.228 634.937 30.5394 76.0495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.4247 197.221 60.7309 19.5014 218.917

CAGE analysis