Hb_000624_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig624: 76084-77940
Sequence    

Annotation

kegg
ID rcu:RCOM_0124680
description transcription factor, putative
nr
ID AGL39660.1
description NAC transcription factor 004 [Jatropha curcas]
swissprot
ID O04017
description Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1
trembl
ID R4NHI9
description NAC transcription factor 004 OS=Jatropha curcas GN=JCGZ_15306 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cup-shaped cotyledon 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51619: 76592-77643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000624_020 0.0 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
2 Hb_121304_020 0.2228018075 - - -
3 Hb_000663_030 0.251694075 - - -
4 Hb_002400_370 0.2580953259 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
5 Hb_001195_080 0.2747470195 - - PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]
6 Hb_004968_010 0.2999087328 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
7 Hb_010423_010 0.3056478745 - - -
8 Hb_002498_210 0.3098261933 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
9 Hb_001449_060 0.3195656959 - - kelch repeat protein, putative [Ricinus communis]
10 Hb_004242_070 0.3199047408 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
11 Hb_123560_030 0.3223607061 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_002847_020 0.3251970993 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
13 Hb_001904_040 0.3278684424 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
14 Hb_001148_020 0.3373353397 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
15 Hb_002235_180 0.3375020283 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
16 Hb_025595_010 0.3392429682 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
17 Hb_000347_090 0.3400576727 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
18 Hb_000638_150 0.3406189122 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
19 Hb_009913_010 0.3432373673 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
20 Hb_000184_140 0.3448690191 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000624_020 Hb_000624_020 Hb_121304_020 Hb_121304_020 Hb_000624_020--Hb_121304_020 Hb_000663_030 Hb_000663_030 Hb_000624_020--Hb_000663_030 Hb_002400_370 Hb_002400_370 Hb_000624_020--Hb_002400_370 Hb_001195_080 Hb_001195_080 Hb_000624_020--Hb_001195_080 Hb_004968_010 Hb_004968_010 Hb_000624_020--Hb_004968_010 Hb_010423_010 Hb_010423_010 Hb_000624_020--Hb_010423_010 Hb_001148_020 Hb_001148_020 Hb_121304_020--Hb_001148_020 Hb_121304_020--Hb_000663_030 Hb_000347_090 Hb_000347_090 Hb_121304_020--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_121304_020--Hb_011903_010 Hb_068347_010 Hb_068347_010 Hb_121304_020--Hb_068347_010 Hb_000663_030--Hb_000347_090 Hb_000663_030--Hb_011903_010 Hb_122259_010 Hb_122259_010 Hb_000663_030--Hb_122259_010 Hb_144547_010 Hb_144547_010 Hb_000663_030--Hb_144547_010 Hb_002498_210 Hb_002498_210 Hb_002400_370--Hb_002498_210 Hb_004242_070 Hb_004242_070 Hb_002400_370--Hb_004242_070 Hb_000184_140 Hb_000184_140 Hb_002400_370--Hb_000184_140 Hb_083493_020 Hb_083493_020 Hb_002400_370--Hb_083493_020 Hb_116360_010 Hb_116360_010 Hb_002400_370--Hb_116360_010 Hb_176844_010 Hb_176844_010 Hb_001195_080--Hb_176844_010 Hb_002847_020 Hb_002847_020 Hb_001195_080--Hb_002847_020 Hb_001077_020 Hb_001077_020 Hb_001195_080--Hb_001077_020 Hb_001449_060 Hb_001449_060 Hb_001195_080--Hb_001449_060 Hb_007181_040 Hb_007181_040 Hb_001195_080--Hb_007181_040 Hb_099990_030 Hb_099990_030 Hb_004968_010--Hb_099990_030 Hb_002235_180 Hb_002235_180 Hb_004968_010--Hb_002235_180 Hb_001124_030 Hb_001124_030 Hb_004968_010--Hb_001124_030 Hb_000787_010 Hb_000787_010 Hb_004968_010--Hb_000787_010 Hb_003292_060 Hb_003292_060 Hb_004968_010--Hb_003292_060 Hb_004968_010--Hb_000663_030 Hb_022593_030 Hb_022593_030 Hb_010423_010--Hb_022593_030 Hb_001369_560 Hb_001369_560 Hb_010423_010--Hb_001369_560 Hb_096473_010 Hb_096473_010 Hb_010423_010--Hb_096473_010 Hb_000108_040 Hb_000108_040 Hb_010423_010--Hb_000108_040 Hb_003442_010 Hb_003442_010 Hb_010423_010--Hb_003442_010 Hb_001004_050 Hb_001004_050 Hb_010423_010--Hb_001004_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21905 0.64203 0.109906 0.506939 0.0192027 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0468809 0 0 0.162877 0

CAGE analysis