Hb_001077_020

Information

Type -
Description -
Location Contig1077: 19473-20144
Sequence    

Annotation

kegg
ID rcu:RCOM_0618080
description Nodulin, putative
nr
ID KDP42890.1
description hypothetical protein JCGZ_23832 [Jatropha curcas]
swissprot
ID Q9M2C0
description Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1
trembl
ID A0A067LEF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23832 PE=4 SV=1
Gene Ontology
ID GO:0005774
description vacuolar iron transporter homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001077_020 0.0 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
2 Hb_002847_020 0.1546673784 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
3 Hb_001449_060 0.2348413053 - - kelch repeat protein, putative [Ricinus communis]
4 Hb_085892_020 0.2720839585 - - -
5 Hb_001195_080 0.2953065446 - - PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]
6 Hb_123560_030 0.3097905144 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_000794_040 0.3131028382 - - PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]
8 Hb_005730_130 0.3183032181 - - PRA1 family protein [Theobroma cacao]
9 Hb_000155_060 0.3320375016 - - ATP binding protein, putative [Ricinus communis]
10 Hb_004449_230 0.337285541 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_000258_150 0.3389458229 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
12 Hb_000101_180 0.3407817674 - - -
13 Hb_000098_020 0.3530372708 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
14 Hb_000624_020 0.3539811394 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
15 Hb_000313_320 0.354737307 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
16 Hb_001001_050 0.357299353 - - CXE protein [Hevea brasiliensis]
17 Hb_176844_010 0.358820094 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
18 Hb_000463_060 0.3628545518 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
19 Hb_011364_030 0.3643528804 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
20 Hb_113084_010 0.3650413061 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_001077_020 Hb_001077_020 Hb_002847_020 Hb_002847_020 Hb_001077_020--Hb_002847_020 Hb_001449_060 Hb_001449_060 Hb_001077_020--Hb_001449_060 Hb_085892_020 Hb_085892_020 Hb_001077_020--Hb_085892_020 Hb_001195_080 Hb_001195_080 Hb_001077_020--Hb_001195_080 Hb_123560_030 Hb_123560_030 Hb_001077_020--Hb_123560_030 Hb_000794_040 Hb_000794_040 Hb_001077_020--Hb_000794_040 Hb_002847_020--Hb_001449_060 Hb_002847_020--Hb_001195_080 Hb_010770_010 Hb_010770_010 Hb_002847_020--Hb_010770_010 Hb_176844_010 Hb_176844_010 Hb_002847_020--Hb_176844_010 Hb_000624_020 Hb_000624_020 Hb_002847_020--Hb_000624_020 Hb_003098_010 Hb_003098_010 Hb_001449_060--Hb_003098_010 Hb_005730_130 Hb_005730_130 Hb_001449_060--Hb_005730_130 Hb_076038_010 Hb_076038_010 Hb_001449_060--Hb_076038_010 Hb_000311_030 Hb_000311_030 Hb_001449_060--Hb_000311_030 Hb_000548_030 Hb_000548_030 Hb_085892_020--Hb_000548_030 Hb_000258_150 Hb_000258_150 Hb_085892_020--Hb_000258_150 Hb_000959_360 Hb_000959_360 Hb_085892_020--Hb_000959_360 Hb_000101_180 Hb_000101_180 Hb_085892_020--Hb_000101_180 Hb_003304_050 Hb_003304_050 Hb_085892_020--Hb_003304_050 Hb_100414_010 Hb_100414_010 Hb_085892_020--Hb_100414_010 Hb_001195_080--Hb_000624_020 Hb_001195_080--Hb_176844_010 Hb_001195_080--Hb_001449_060 Hb_007181_040 Hb_007181_040 Hb_001195_080--Hb_007181_040 Hb_000377_140 Hb_000377_140 Hb_123560_030--Hb_000377_140 Hb_144547_010 Hb_144547_010 Hb_123560_030--Hb_144547_010 Hb_009102_020 Hb_009102_020 Hb_123560_030--Hb_009102_020 Hb_005542_100 Hb_005542_100 Hb_123560_030--Hb_005542_100 Hb_123560_030--Hb_001449_060 Hb_001001_050 Hb_001001_050 Hb_123560_030--Hb_001001_050 Hb_119960_010 Hb_119960_010 Hb_000794_040--Hb_119960_010 Hb_009193_080 Hb_009193_080 Hb_000794_040--Hb_009193_080 Hb_006620_080 Hb_006620_080 Hb_000794_040--Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_000794_040--Hb_011364_030 Hb_033546_020 Hb_033546_020 Hb_000794_040--Hb_033546_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9965 2.00024 0.059604 5.2921 0.799778 0.942203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22753 0.47143 0.119595 0.0823585 0

CAGE analysis