Hb_085892_020

Information

Type -
Description -
Location Contig85892: 6291-6555
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60670: 5935-6610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085892_020 0.0 - - -
2 Hb_000548_030 0.197655793 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
3 Hb_000258_150 0.2219727112 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
4 Hb_000959_360 0.2278649641 - - transporter, putative [Ricinus communis]
5 Hb_000101_180 0.2309818381 - - -
6 Hb_003304_050 0.2371210086 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
7 Hb_100414_010 0.2393300443 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
8 Hb_000313_320 0.251494888 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
9 Hb_003687_200 0.2576185176 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
10 Hb_007044_210 0.2595404022 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
11 Hb_003654_010 0.2688626341 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
12 Hb_002094_020 0.2693261303 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
13 Hb_001077_020 0.2720839585 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
14 Hb_128496_010 0.2775940889 - - unnamed protein product [Vitis vinifera]
15 Hb_123104_010 0.281777948 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_000641_030 0.2824113282 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
17 Hb_005730_130 0.2875958082 - - PRA1 family protein [Theobroma cacao]
18 Hb_027380_040 0.28913643 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
19 Hb_002307_050 0.2894341144 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
20 Hb_002477_230 0.2898544704 - - PREDICTED: verprolin [Jatropha curcas]

Gene co-expression network

sample Hb_085892_020 Hb_085892_020 Hb_000548_030 Hb_000548_030 Hb_085892_020--Hb_000548_030 Hb_000258_150 Hb_000258_150 Hb_085892_020--Hb_000258_150 Hb_000959_360 Hb_000959_360 Hb_085892_020--Hb_000959_360 Hb_000101_180 Hb_000101_180 Hb_085892_020--Hb_000101_180 Hb_003304_050 Hb_003304_050 Hb_085892_020--Hb_003304_050 Hb_100414_010 Hb_100414_010 Hb_085892_020--Hb_100414_010 Hb_000548_030--Hb_003304_050 Hb_000641_030 Hb_000641_030 Hb_000548_030--Hb_000641_030 Hb_000548_030--Hb_100414_010 Hb_000139_330 Hb_000139_330 Hb_000548_030--Hb_000139_330 Hb_000548_030--Hb_000959_360 Hb_003654_010 Hb_003654_010 Hb_000548_030--Hb_003654_010 Hb_010560_060 Hb_010560_060 Hb_000258_150--Hb_010560_060 Hb_022174_010 Hb_022174_010 Hb_000258_150--Hb_022174_010 Hb_000258_150--Hb_003654_010 Hb_000365_260 Hb_000365_260 Hb_000258_150--Hb_000365_260 Hb_004007_160 Hb_004007_160 Hb_000258_150--Hb_004007_160 Hb_000098_020 Hb_000098_020 Hb_000258_150--Hb_000098_020 Hb_002388_060 Hb_002388_060 Hb_000959_360--Hb_002388_060 Hb_000959_360--Hb_000641_030 Hb_002094_020 Hb_002094_020 Hb_000959_360--Hb_002094_020 Hb_001980_020 Hb_001980_020 Hb_000959_360--Hb_001980_020 Hb_000373_290 Hb_000373_290 Hb_000959_360--Hb_000373_290 Hb_000313_320 Hb_000313_320 Hb_000101_180--Hb_000313_320 Hb_017111_010 Hb_017111_010 Hb_000101_180--Hb_017111_010 Hb_000186_100 Hb_000186_100 Hb_000101_180--Hb_000186_100 Hb_123104_010 Hb_123104_010 Hb_000101_180--Hb_123104_010 Hb_000605_010 Hb_000605_010 Hb_000101_180--Hb_000605_010 Hb_003687_200 Hb_003687_200 Hb_003304_050--Hb_003687_200 Hb_003304_050--Hb_000641_030 Hb_026447_030 Hb_026447_030 Hb_003304_050--Hb_026447_030 Hb_003304_050--Hb_003654_010 Hb_002027_220 Hb_002027_220 Hb_003304_050--Hb_002027_220 Hb_006120_200 Hb_006120_200 Hb_100414_010--Hb_006120_200 Hb_004286_040 Hb_004286_040 Hb_100414_010--Hb_004286_040 Hb_000018_190 Hb_000018_190 Hb_100414_010--Hb_000018_190 Hb_027380_040 Hb_027380_040 Hb_100414_010--Hb_027380_040 Hb_003018_140 Hb_003018_140 Hb_100414_010--Hb_003018_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
197.281 2.55792 13.0803 51.2467 22.8493 27.8847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.3756 31.8969 12.2876 0.660677 0

CAGE analysis