Hb_010560_060

Information

Type -
Description -
Location Contig10560: 35800-40722
Sequence    

Annotation

kegg
ID rcu:RCOM_0902830
description protein with unknown function (EC:2.7.11.25)
nr
ID XP_012091262.1
description PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067JA85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21152 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01867: 35800-40357 , PASA_asmbl_01869: 36483-36689 , PASA_asmbl_01871: 37592-37993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010560_060 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
2 Hb_000098_020 0.1284216646 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
3 Hb_116349_160 0.148584501 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
4 Hb_028358_010 0.148979283 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
5 Hb_007803_060 0.1490772235 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
6 Hb_002111_060 0.1530272674 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
7 Hb_000563_600 0.1544739722 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
8 Hb_000956_130 0.1564219053 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
9 Hb_001946_040 0.1580063559 - - conserved hypothetical protein [Ricinus communis]
10 Hb_057878_010 0.1589340001 - - hypothetical protein VITISV_036304 [Vitis vinifera]
11 Hb_000336_270 0.1589499696 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_000317_330 0.163167418 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
13 Hb_000179_200 0.1643234952 - - unnamed protein product [Vitis vinifera]
14 Hb_004218_150 0.1648711157 - - electron transporter, putative [Ricinus communis]
15 Hb_148121_080 0.1650296685 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
16 Hb_005288_200 0.1663439545 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_002000_060 0.1665304875 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
18 Hb_003858_040 0.1667579143 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
19 Hb_000214_040 0.1695825254 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000086_200 0.169874062 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_010560_060 Hb_010560_060 Hb_000098_020 Hb_000098_020 Hb_010560_060--Hb_000098_020 Hb_116349_160 Hb_116349_160 Hb_010560_060--Hb_116349_160 Hb_028358_010 Hb_028358_010 Hb_010560_060--Hb_028358_010 Hb_007803_060 Hb_007803_060 Hb_010560_060--Hb_007803_060 Hb_002111_060 Hb_002111_060 Hb_010560_060--Hb_002111_060 Hb_000563_600 Hb_000563_600 Hb_010560_060--Hb_000563_600 Hb_000098_020--Hb_002111_060 Hb_000157_200 Hb_000157_200 Hb_000098_020--Hb_000157_200 Hb_000516_040 Hb_000516_040 Hb_000098_020--Hb_000516_040 Hb_078477_050 Hb_078477_050 Hb_000098_020--Hb_078477_050 Hb_000258_150 Hb_000258_150 Hb_000098_020--Hb_000258_150 Hb_000956_130 Hb_000956_130 Hb_116349_160--Hb_000956_130 Hb_000761_020 Hb_000761_020 Hb_116349_160--Hb_000761_020 Hb_004218_150 Hb_004218_150 Hb_116349_160--Hb_004218_150 Hb_116349_160--Hb_028358_010 Hb_000120_240 Hb_000120_240 Hb_116349_160--Hb_000120_240 Hb_007594_030 Hb_007594_030 Hb_116349_160--Hb_007594_030 Hb_028358_010--Hb_000956_130 Hb_004007_160 Hb_004007_160 Hb_028358_010--Hb_004007_160 Hb_028358_010--Hb_000761_020 Hb_028358_010--Hb_000120_240 Hb_000390_170 Hb_000390_170 Hb_028358_010--Hb_000390_170 Hb_001500_050 Hb_001500_050 Hb_007803_060--Hb_001500_050 Hb_009620_050 Hb_009620_050 Hb_007803_060--Hb_009620_050 Hb_000107_400 Hb_000107_400 Hb_007803_060--Hb_000107_400 Hb_116349_030 Hb_116349_030 Hb_007803_060--Hb_116349_030 Hb_000879_160 Hb_000879_160 Hb_007803_060--Hb_000879_160 Hb_000563_640 Hb_000563_640 Hb_007803_060--Hb_000563_640 Hb_000645_120 Hb_000645_120 Hb_002111_060--Hb_000645_120 Hb_002111_060--Hb_009620_050 Hb_003430_060 Hb_003430_060 Hb_002111_060--Hb_003430_060 Hb_000086_200 Hb_000086_200 Hb_002111_060--Hb_000086_200 Hb_002111_060--Hb_078477_050 Hb_000836_270 Hb_000836_270 Hb_002111_060--Hb_000836_270 Hb_000599_080 Hb_000599_080 Hb_000563_600--Hb_000599_080 Hb_004631_190 Hb_004631_190 Hb_000563_600--Hb_004631_190 Hb_002311_070 Hb_002311_070 Hb_000563_600--Hb_002311_070 Hb_000922_020 Hb_000922_020 Hb_000563_600--Hb_000922_020 Hb_000002_490 Hb_000002_490 Hb_000563_600--Hb_000002_490 Hb_000718_070 Hb_000718_070 Hb_000563_600--Hb_000718_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.9396 10.4421 6.17141 11.6401 11.7763 8.73971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.64291 4.89881 8.61334 3.7626 4.148

CAGE analysis