Hb_000086_200

Information

Type -
Description -
Location Contig86: 169400-171722
Sequence    

Annotation

kegg
ID rcu:RCOM_0260200
description Adaptin ear-binding coat-associated protein, putative
nr
ID AIU41665.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q681Q7
description Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1
trembl
ID A0A097P9S6
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI18 PE=2 SV=1
Gene Ontology
ID GO:0005576
description adaptin ear-binding coat-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60716: 169623-171769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_200 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_002111_060 0.118871903 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
3 Hb_000197_210 0.1210306906 - - phosphatidylinositol transporter, putative [Ricinus communis]
4 Hb_176152_010 0.1264791657 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
5 Hb_000025_090 0.1274764276 - - tubulin beta chain, putative [Ricinus communis]
6 Hb_000236_380 0.1303898554 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
7 Hb_000123_090 0.1340579724 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
8 Hb_000322_090 0.134078036 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
9 Hb_028390_010 0.1359860051 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
10 Hb_001863_110 0.1376891571 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_000392_070 0.1380069819 - - catalytic, putative [Ricinus communis]
12 Hb_027028_020 0.1388011825 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
13 Hb_001689_020 0.1416287239 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
14 Hb_000322_100 0.1423892294 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
15 Hb_004218_150 0.1433582603 - - electron transporter, putative [Ricinus communis]
16 Hb_033153_020 0.1441634611 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
17 Hb_006816_390 0.1452140106 - - protein phosphatase, putative [Ricinus communis]
18 Hb_116349_160 0.1454425725 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
19 Hb_002400_470 0.1465279019 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000034_050 0.1467011712 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_200 Hb_000086_200 Hb_002111_060 Hb_002111_060 Hb_000086_200--Hb_002111_060 Hb_000197_210 Hb_000197_210 Hb_000086_200--Hb_000197_210 Hb_176152_010 Hb_176152_010 Hb_000086_200--Hb_176152_010 Hb_000025_090 Hb_000025_090 Hb_000086_200--Hb_000025_090 Hb_000236_380 Hb_000236_380 Hb_000086_200--Hb_000236_380 Hb_000123_090 Hb_000123_090 Hb_000086_200--Hb_000123_090 Hb_000645_120 Hb_000645_120 Hb_002111_060--Hb_000645_120 Hb_009620_050 Hb_009620_050 Hb_002111_060--Hb_009620_050 Hb_003430_060 Hb_003430_060 Hb_002111_060--Hb_003430_060 Hb_078477_050 Hb_078477_050 Hb_002111_060--Hb_078477_050 Hb_000836_270 Hb_000836_270 Hb_002111_060--Hb_000836_270 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000197_210--Hb_000236_380 Hb_008406_140 Hb_008406_140 Hb_000197_210--Hb_008406_140 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_000497_230 Hb_000497_230 Hb_000197_210--Hb_000497_230 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_000376_090 Hb_000376_090 Hb_176152_010--Hb_000376_090 Hb_000347_280 Hb_000347_280 Hb_176152_010--Hb_000347_280 Hb_000335_010 Hb_000335_010 Hb_176152_010--Hb_000335_010 Hb_000329_090 Hb_000329_090 Hb_176152_010--Hb_000329_090 Hb_004586_180 Hb_004586_180 Hb_176152_010--Hb_004586_180 Hb_176152_010--Hb_001863_110 Hb_000933_060 Hb_000933_060 Hb_000025_090--Hb_000933_060 Hb_000083_250 Hb_000083_250 Hb_000025_090--Hb_000083_250 Hb_000107_200 Hb_000107_200 Hb_000025_090--Hb_000107_200 Hb_001018_130 Hb_001018_130 Hb_000025_090--Hb_001018_130 Hb_000077_090 Hb_000077_090 Hb_000025_090--Hb_000077_090 Hb_002400_470 Hb_002400_470 Hb_000236_380--Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_000236_380--Hb_008864_110 Hb_002255_050 Hb_002255_050 Hb_000236_380--Hb_002255_050 Hb_001348_050 Hb_001348_050 Hb_000236_380--Hb_001348_050 Hb_007592_030 Hb_007592_030 Hb_000236_380--Hb_007592_030 Hb_057878_010 Hb_057878_010 Hb_000236_380--Hb_057878_010 Hb_000123_090--Hb_008864_110 Hb_000933_020 Hb_000933_020 Hb_000123_090--Hb_000933_020 Hb_003605_130 Hb_003605_130 Hb_000123_090--Hb_003605_130 Hb_000123_090--Hb_002400_470 Hb_001195_560 Hb_001195_560 Hb_000123_090--Hb_001195_560 Hb_001047_030 Hb_001047_030 Hb_000123_090--Hb_001047_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
198.016 60.0721 24.5544 136.963 160.327 127.425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.086 42.8783 78.1326 36.1708 48.3754

CAGE analysis