Hb_000025_090

Information

Type -
Description -
Location Contig25: 95679-98689
Sequence    

Annotation

kegg
ID rcu:RCOM_0786390
description tubulin beta chain, putative
nr
ID XP_002523247.1
description tubulin beta chain, putative [Ricinus communis]
swissprot
ID P45960
description Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1
trembl
ID B9SB78
description Tubulin beta chain, putative OS=Ricinus communis GN=RCOM_0786390 PE=3 SV=1
Gene Ontology
ID GO:0005874
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26044: 94950-98649
cDNA
(Sanger)
(ID:Location)		 006_F01.ab1: 94946-96782 , 010_M15.ab1: 94957-96782 , 012_B08.ab1: 94946-96762 , 016_A17.ab1: 94946-96756 , 017_K19.ab1: 94939-96676 , 018_H04.ab1: 94950-96734 , 020_C17.ab1: 94950-97707 , 030_N13.ab1: 94950-96781 , 031_M13.ab1: 94957-96763 , 034_F19.ab1: 94954-97715 , 039_O21.ab1: 94954-96078 , 047_A12.ab1: 94950-96775

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_090 0.0 - - tubulin beta chain, putative [Ricinus communis]
2 Hb_000933_060 0.1144079612 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000083_250 0.1144871542 - - ring finger protein, putative [Ricinus communis]
4 Hb_000107_200 0.1168881536 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
5 Hb_001018_130 0.1213270355 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
6 Hb_000077_090 0.1247617459 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000086_200 0.1274764276 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000554_010 0.1289918247 - - transporter, putative [Ricinus communis]
9 Hb_007741_020 0.1305368617 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
10 Hb_001454_130 0.1317777526 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
11 Hb_000197_210 0.1326304524 - - phosphatidylinositol transporter, putative [Ricinus communis]
12 Hb_000606_080 0.135392433 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
13 Hb_012395_180 0.1359168905 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
14 Hb_003376_050 0.1362785971 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_004117_160 0.1365507929 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
16 Hb_000649_050 0.136791363 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
17 Hb_033153_020 0.1375938319 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
18 Hb_002067_120 0.1378740132 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
19 Hb_004846_200 0.1393358987 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
20 Hb_000281_110 0.1415376743 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_090 Hb_000025_090 Hb_000933_060 Hb_000933_060 Hb_000025_090--Hb_000933_060 Hb_000083_250 Hb_000083_250 Hb_000025_090--Hb_000083_250 Hb_000107_200 Hb_000107_200 Hb_000025_090--Hb_000107_200 Hb_001018_130 Hb_001018_130 Hb_000025_090--Hb_001018_130 Hb_000077_090 Hb_000077_090 Hb_000025_090--Hb_000077_090 Hb_000086_200 Hb_000086_200 Hb_000025_090--Hb_000086_200 Hb_050454_010 Hb_050454_010 Hb_000933_060--Hb_050454_010 Hb_044736_010 Hb_044736_010 Hb_000933_060--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_000933_060--Hb_003994_280 Hb_001640_030 Hb_001640_030 Hb_000933_060--Hb_001640_030 Hb_000933_060--Hb_001018_130 Hb_000031_150 Hb_000031_150 Hb_000933_060--Hb_000031_150 Hb_000808_280 Hb_000808_280 Hb_000083_250--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_000083_250--Hb_001454_130 Hb_000630_050 Hb_000630_050 Hb_000083_250--Hb_000630_050 Hb_007904_160 Hb_007904_160 Hb_000083_250--Hb_007904_160 Hb_000146_050 Hb_000146_050 Hb_000083_250--Hb_000146_050 Hb_000083_250--Hb_001018_130 Hb_000107_200--Hb_001018_130 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_002445_120 Hb_002445_120 Hb_000107_200--Hb_002445_120 Hb_002067_120 Hb_002067_120 Hb_000107_200--Hb_002067_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_005023_010 Hb_005023_010 Hb_001018_130--Hb_005023_010 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_001018_130--Hb_000146_050 Hb_001018_110 Hb_001018_110 Hb_001018_130--Hb_001018_110 Hb_001018_130--Hb_002445_120 Hb_007741_020 Hb_007741_020 Hb_000077_090--Hb_007741_020 Hb_000510_200 Hb_000510_200 Hb_000077_090--Hb_000510_200 Hb_001863_110 Hb_001863_110 Hb_000077_090--Hb_001863_110 Hb_000316_030 Hb_000316_030 Hb_000077_090--Hb_000316_030 Hb_000436_040 Hb_000436_040 Hb_000077_090--Hb_000436_040 Hb_003363_010 Hb_003363_010 Hb_000077_090--Hb_003363_010 Hb_002111_060 Hb_002111_060 Hb_000086_200--Hb_002111_060 Hb_000197_210 Hb_000197_210 Hb_000086_200--Hb_000197_210 Hb_176152_010 Hb_176152_010 Hb_000086_200--Hb_176152_010 Hb_000236_380 Hb_000236_380 Hb_000086_200--Hb_000236_380 Hb_000123_090 Hb_000123_090 Hb_000086_200--Hb_000123_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
456.547 135.725 82.7864 477.717 268.072 520.879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
252.209 155.216 227.001 111.087 211.211

CAGE analysis