Hb_007803_060

Information

Type -
Description -
Location Contig7803: 73666-76017
Sequence    

Annotation

kegg
ID rcu:RCOM_1253960
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_012070633.1
description PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
swissprot
ID Q72HI4
description Demethylmenaquinone methyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=menG PE=3 SV=1
trembl
ID A0A067KS17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00684 PE=4 SV=1
Gene Ontology
ID GO:0005774
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57950: 73863-76014
cDNA
(Sanger)
(ID:Location)		 021_E10.ab1: 74878-76014

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007803_060 0.0 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
2 Hb_001500_050 0.0917128828 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
3 Hb_009620_050 0.1079453909 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
4 Hb_000107_400 0.1097610156 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
5 Hb_116349_030 0.1161957089 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
6 Hb_000879_160 0.1191156829 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
7 Hb_000563_640 0.1203905032 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
8 Hb_007765_080 0.1206971497 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
9 Hb_000563_600 0.1210537904 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
10 Hb_147505_010 0.1232133555 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
11 Hb_001143_250 0.1263653998 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
12 Hb_005993_050 0.1277845466 - - Protein AFR, putative [Ricinus communis]
13 Hb_002000_060 0.1283933094 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
14 Hb_008695_020 0.1290846658 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
15 Hb_000012_140 0.1300186517 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007558_120 0.1316333614 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
17 Hb_000855_020 0.1318532872 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
18 Hb_011344_160 0.1336929223 - - PREDICTED: primary amine oxidase [Jatropha curcas]
19 Hb_000044_040 0.1338421777 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_004635_050 0.1352102635 - - nucleolar phosphoprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007803_060 Hb_007803_060 Hb_001500_050 Hb_001500_050 Hb_007803_060--Hb_001500_050 Hb_009620_050 Hb_009620_050 Hb_007803_060--Hb_009620_050 Hb_000107_400 Hb_000107_400 Hb_007803_060--Hb_000107_400 Hb_116349_030 Hb_116349_030 Hb_007803_060--Hb_116349_030 Hb_000879_160 Hb_000879_160 Hb_007803_060--Hb_000879_160 Hb_000563_640 Hb_000563_640 Hb_007803_060--Hb_000563_640 Hb_000044_040 Hb_000044_040 Hb_001500_050--Hb_000044_040 Hb_011344_160 Hb_011344_160 Hb_001500_050--Hb_011344_160 Hb_000009_090 Hb_000009_090 Hb_001500_050--Hb_000009_090 Hb_002022_060 Hb_002022_060 Hb_001500_050--Hb_002022_060 Hb_006373_010 Hb_006373_010 Hb_001500_050--Hb_006373_010 Hb_009620_050--Hb_000563_640 Hb_006831_110 Hb_006831_110 Hb_009620_050--Hb_006831_110 Hb_005321_020 Hb_005321_020 Hb_009620_050--Hb_005321_020 Hb_000107_500 Hb_000107_500 Hb_009620_050--Hb_000107_500 Hb_002174_020 Hb_002174_020 Hb_009620_050--Hb_002174_020 Hb_002042_140 Hb_002042_140 Hb_009620_050--Hb_002042_140 Hb_002749_110 Hb_002749_110 Hb_000107_400--Hb_002749_110 Hb_008695_020 Hb_008695_020 Hb_000107_400--Hb_008695_020 Hb_000107_400--Hb_116349_030 Hb_000574_440 Hb_000574_440 Hb_000107_400--Hb_000574_440 Hb_000849_020 Hb_000849_020 Hb_000107_400--Hb_000849_020 Hb_003018_130 Hb_003018_130 Hb_000107_400--Hb_003018_130 Hb_007765_080 Hb_007765_080 Hb_116349_030--Hb_007765_080 Hb_116349_030--Hb_000574_440 Hb_000855_020 Hb_000855_020 Hb_116349_030--Hb_000855_020 Hb_116349_030--Hb_008695_020 Hb_000003_290 Hb_000003_290 Hb_116349_030--Hb_000003_290 Hb_000935_090 Hb_000935_090 Hb_000879_160--Hb_000935_090 Hb_000046_070 Hb_000046_070 Hb_000879_160--Hb_000046_070 Hb_000796_190 Hb_000796_190 Hb_000879_160--Hb_000796_190 Hb_004429_160 Hb_004429_160 Hb_000879_160--Hb_004429_160 Hb_000025_650 Hb_000025_650 Hb_000879_160--Hb_000025_650 Hb_007558_120 Hb_007558_120 Hb_000879_160--Hb_007558_120 Hb_000563_640--Hb_005321_020 Hb_002615_090 Hb_002615_090 Hb_000563_640--Hb_002615_090 Hb_000563_640--Hb_006831_110 Hb_000922_370 Hb_000922_370 Hb_000563_640--Hb_000922_370 Hb_074969_010 Hb_074969_010 Hb_000563_640--Hb_074969_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3247 22.0266 10.5534 15.4004 22.3692 17.5012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9041 6.50595 11.1815 6.51264 18.333

CAGE analysis