Hb_000003_290

Information

Type -
Description -
Location Contig3: 172449-175630
Sequence    

Annotation

kegg
ID rcu:RCOM_1453870
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP40487.1
description hypothetical protein JCGZ_24486 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24486 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31397: 172583-175076 , PASA_asmbl_31398: 175166-175660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_290 0.0 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
2 Hb_009503_030 0.0711212008 - - protein dimerization, putative [Ricinus communis]
3 Hb_000032_490 0.077513475 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
4 Hb_003018_130 0.0801697897 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
5 Hb_000574_440 0.0802852783 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
6 Hb_002367_130 0.0843461616 - - UNC-50 family protein isoform 1 [Theobroma cacao]
7 Hb_000107_400 0.085519198 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
8 Hb_000502_050 0.0856410355 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
9 Hb_004100_080 0.0863040019 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000855_020 0.0869311766 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
11 Hb_004055_150 0.0886068955 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001379_110 0.0916275739 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
13 Hb_007007_060 0.0920805354 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
14 Hb_116349_030 0.0935097169 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
15 Hb_003785_040 0.0937538465 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
16 Hb_002686_250 0.094145828 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
17 Hb_000665_160 0.0947924219 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
18 Hb_000946_120 0.0949739974 - - DNA binding protein, putative [Ricinus communis]
19 Hb_008695_020 0.0951419782 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
20 Hb_002835_230 0.0951748574 - - leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_290 Hb_000003_290 Hb_009503_030 Hb_009503_030 Hb_000003_290--Hb_009503_030 Hb_000032_490 Hb_000032_490 Hb_000003_290--Hb_000032_490 Hb_003018_130 Hb_003018_130 Hb_000003_290--Hb_003018_130 Hb_000574_440 Hb_000574_440 Hb_000003_290--Hb_000574_440 Hb_002367_130 Hb_002367_130 Hb_000003_290--Hb_002367_130 Hb_000107_400 Hb_000107_400 Hb_000003_290--Hb_000107_400 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_003785_040 Hb_003785_040 Hb_009503_030--Hb_003785_040 Hb_009503_030--Hb_000574_440 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_002351_020 Hb_002351_020 Hb_000032_490--Hb_002351_020 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000946_120 Hb_000946_120 Hb_000032_490--Hb_000946_120 Hb_000832_090 Hb_000832_090 Hb_000032_490--Hb_000832_090 Hb_001541_260 Hb_001541_260 Hb_000032_490--Hb_001541_260 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140 Hb_002823_030 Hb_002823_030 Hb_003018_130--Hb_002823_030 Hb_002749_110 Hb_002749_110 Hb_003018_130--Hb_002749_110 Hb_002835_230 Hb_002835_230 Hb_003018_130--Hb_002835_230 Hb_001195_560 Hb_001195_560 Hb_003018_130--Hb_001195_560 Hb_004785_100 Hb_004785_100 Hb_003018_130--Hb_004785_100 Hb_003018_130--Hb_000574_440 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_000116_180 Hb_000116_180 Hb_002367_130--Hb_000116_180 Hb_001828_160 Hb_001828_160 Hb_002367_130--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_002367_130--Hb_000207_310 Hb_002367_130--Hb_003018_130 Hb_002367_130--Hb_021422_010 Hb_001369_420 Hb_001369_420 Hb_002367_130--Hb_001369_420 Hb_000107_400--Hb_002749_110 Hb_008695_020 Hb_008695_020 Hb_000107_400--Hb_008695_020 Hb_116349_030 Hb_116349_030 Hb_000107_400--Hb_116349_030 Hb_000107_400--Hb_000574_440 Hb_000849_020 Hb_000849_020 Hb_000107_400--Hb_000849_020 Hb_000107_400--Hb_003018_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7134 8.76543 7.7688 4.77076 16.6549 9.11974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.10501 7.99842 8.38734 5.18581 9.12087

CAGE analysis