Hb_000258_150

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig258: 136338-137276
Sequence    

Annotation

kegg
ID rcu:RCOM_0836390
description transcription factor, putative
nr
ID XP_012067639.1
description PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
swissprot
ID Q9SEZ1
description Zinc-finger homeodomain protein 11 OS=Arabidopsis thaliana GN=ZHD11 PE=1 SV=1
trembl
ID A0A067KYG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15604 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_150 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
2 Hb_010560_060 0.1789410362 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
3 Hb_022174_010 0.181846249 - - elicitor-responsive protein [Hevea brasiliensis]
4 Hb_003654_010 0.1891767951 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
5 Hb_000365_260 0.1929785349 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004007_160 0.1943417164 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
7 Hb_000098_020 0.1978833766 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
8 Hb_128496_010 0.2034794801 - - unnamed protein product [Vitis vinifera]
9 Hb_002027_220 0.2047921469 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_100414_010 0.2083310001 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
11 Hb_000179_200 0.208478043 - - unnamed protein product [Vitis vinifera]
12 Hb_000548_030 0.2116881398 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
13 Hb_028358_010 0.211785466 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
14 Hb_000956_130 0.2151885408 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
15 Hb_116349_160 0.2166249675 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
16 Hb_000313_320 0.217472286 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
17 Hb_085892_020 0.2219727112 - - -
18 Hb_000554_010 0.2251502852 - - transporter, putative [Ricinus communis]
19 Hb_000120_240 0.2279100122 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
20 Hb_004286_040 0.2279135804 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_150 Hb_000258_150 Hb_010560_060 Hb_010560_060 Hb_000258_150--Hb_010560_060 Hb_022174_010 Hb_022174_010 Hb_000258_150--Hb_022174_010 Hb_003654_010 Hb_003654_010 Hb_000258_150--Hb_003654_010 Hb_000365_260 Hb_000365_260 Hb_000258_150--Hb_000365_260 Hb_004007_160 Hb_004007_160 Hb_000258_150--Hb_004007_160 Hb_000098_020 Hb_000098_020 Hb_000258_150--Hb_000098_020 Hb_010560_060--Hb_000098_020 Hb_116349_160 Hb_116349_160 Hb_010560_060--Hb_116349_160 Hb_028358_010 Hb_028358_010 Hb_010560_060--Hb_028358_010 Hb_007803_060 Hb_007803_060 Hb_010560_060--Hb_007803_060 Hb_002111_060 Hb_002111_060 Hb_010560_060--Hb_002111_060 Hb_000563_600 Hb_000563_600 Hb_010560_060--Hb_000563_600 Hb_013399_080 Hb_013399_080 Hb_022174_010--Hb_013399_080 Hb_000069_670 Hb_000069_670 Hb_022174_010--Hb_000069_670 Hb_000096_080 Hb_000096_080 Hb_022174_010--Hb_000096_080 Hb_145655_010 Hb_145655_010 Hb_022174_010--Hb_145655_010 Hb_000207_100 Hb_000207_100 Hb_022174_010--Hb_000207_100 Hb_003654_010--Hb_028358_010 Hb_002027_220 Hb_002027_220 Hb_003654_010--Hb_002027_220 Hb_000956_130 Hb_000956_130 Hb_003654_010--Hb_000956_130 Hb_004705_040 Hb_004705_040 Hb_003654_010--Hb_004705_040 Hb_003654_010--Hb_004007_160 Hb_003304_050 Hb_003304_050 Hb_003654_010--Hb_003304_050 Hb_162286_020 Hb_162286_020 Hb_000365_260--Hb_162286_020 Hb_000179_200 Hb_000179_200 Hb_000365_260--Hb_000179_200 Hb_001268_210 Hb_001268_210 Hb_000365_260--Hb_001268_210 Hb_001916_120 Hb_001916_120 Hb_000365_260--Hb_001916_120 Hb_000365_260--Hb_002027_220 Hb_000465_120 Hb_000465_120 Hb_000365_260--Hb_000465_120 Hb_004007_160--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_004007_160--Hb_000554_010 Hb_004007_160--Hb_000956_130 Hb_000649_050 Hb_000649_050 Hb_004007_160--Hb_000649_050 Hb_004007_160--Hb_028358_010 Hb_000299_040 Hb_000299_040 Hb_004007_160--Hb_000299_040 Hb_000098_020--Hb_002111_060 Hb_000157_200 Hb_000157_200 Hb_000098_020--Hb_000157_200 Hb_000516_040 Hb_000516_040 Hb_000098_020--Hb_000516_040 Hb_078477_050 Hb_078477_050 Hb_000098_020--Hb_078477_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.39305 0.383761 0.608557 2.41013 1.25534 1.31866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.932325 0.905748 1.18567 0.225846 0.790371

CAGE analysis