Hb_005542_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5542: 81123-84498
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03910g
description hypothetical protein
nr
ID XP_006375838.1
description hypothetical protein POPTR_0013s03910g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FRJ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03910g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_100 0.0 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s03910g [Populus trichocarpa]
2 Hb_123560_030 0.2886486216 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_000377_140 0.3103099148 - - -
4 Hb_001489_140 0.3111829703 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]
5 Hb_036026_010 0.3119204764 transcription factor TF Family: FAR1 FAR-RED IMPAIRED RESPONSE [Medicago truncatula]
6 Hb_001584_180 0.3263278382 - - Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao]
7 Hb_129722_010 0.3348530242 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
8 Hb_000116_600 0.3374814358 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_002235_270 0.3378536359 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
10 Hb_084858_010 0.3406168377 - - Uncharacterized protein isoform 3 [Theobroma cacao]
11 Hb_004242_070 0.3413356809 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
12 Hb_144547_010 0.344376527 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_172572_010 0.3466141576 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
14 Hb_001449_060 0.3472826694 - - kelch repeat protein, putative [Ricinus communis]
15 Hb_007157_060 0.3473594917 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_009102_020 0.3541875444 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
17 Hb_005147_050 0.3552724171 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
18 Hb_032907_010 0.3557577507 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
19 Hb_002400_370 0.3563033324 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
20 Hb_023051_010 0.356745937 - - PREDICTED: putative amidase C869.01 [Populus euphratica]

Gene co-expression network

sample Hb_005542_100 Hb_005542_100 Hb_123560_030 Hb_123560_030 Hb_005542_100--Hb_123560_030 Hb_000377_140 Hb_000377_140 Hb_005542_100--Hb_000377_140 Hb_001489_140 Hb_001489_140 Hb_005542_100--Hb_001489_140 Hb_036026_010 Hb_036026_010 Hb_005542_100--Hb_036026_010 Hb_001584_180 Hb_001584_180 Hb_005542_100--Hb_001584_180 Hb_129722_010 Hb_129722_010 Hb_005542_100--Hb_129722_010 Hb_123560_030--Hb_000377_140 Hb_144547_010 Hb_144547_010 Hb_123560_030--Hb_144547_010 Hb_009102_020 Hb_009102_020 Hb_123560_030--Hb_009102_020 Hb_001449_060 Hb_001449_060 Hb_123560_030--Hb_001449_060 Hb_001001_050 Hb_001001_050 Hb_123560_030--Hb_001001_050 Hb_000377_140--Hb_009102_020 Hb_000377_140--Hb_144547_010 Hb_023051_010 Hb_023051_010 Hb_000377_140--Hb_023051_010 Hb_000982_150 Hb_000982_150 Hb_000377_140--Hb_000982_150 Hb_004052_160 Hb_004052_160 Hb_000377_140--Hb_004052_160 Hb_000915_150 Hb_000915_150 Hb_001489_140--Hb_000915_150 Hb_011377_010 Hb_011377_010 Hb_001489_140--Hb_011377_010 Hb_000256_120 Hb_000256_120 Hb_001489_140--Hb_000256_120 Hb_000164_150 Hb_000164_150 Hb_001489_140--Hb_000164_150 Hb_000849_050 Hb_000849_050 Hb_001489_140--Hb_000849_050 Hb_096473_010 Hb_096473_010 Hb_001489_140--Hb_096473_010 Hb_101376_010 Hb_101376_010 Hb_036026_010--Hb_101376_010 Hb_172572_010 Hb_172572_010 Hb_036026_010--Hb_172572_010 Hb_001258_070 Hb_001258_070 Hb_036026_010--Hb_001258_070 Hb_001898_170 Hb_001898_170 Hb_036026_010--Hb_001898_170 Hb_000737_020 Hb_000737_020 Hb_036026_010--Hb_000737_020 Hb_003159_060 Hb_003159_060 Hb_036026_010--Hb_003159_060 Hb_003598_040 Hb_003598_040 Hb_001584_180--Hb_003598_040 Hb_003891_070 Hb_003891_070 Hb_001584_180--Hb_003891_070 Hb_035662_010 Hb_035662_010 Hb_001584_180--Hb_035662_010 Hb_161478_010 Hb_161478_010 Hb_001584_180--Hb_161478_010 Hb_007157_060 Hb_007157_060 Hb_001584_180--Hb_007157_060 Hb_010531_050 Hb_010531_050 Hb_001584_180--Hb_010531_050 Hb_000453_150 Hb_000453_150 Hb_129722_010--Hb_000453_150 Hb_001749_010 Hb_001749_010 Hb_129722_010--Hb_001749_010 Hb_001481_160 Hb_001481_160 Hb_129722_010--Hb_001481_160 Hb_000157_200 Hb_000157_200 Hb_129722_010--Hb_000157_200 Hb_013726_070 Hb_013726_070 Hb_129722_010--Hb_013726_070 Hb_148121_080 Hb_148121_080 Hb_129722_010--Hb_148121_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0805751 0.0107297 0.0101737 0.0583652 0 0.0227347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0278019 0

CAGE analysis