Hb_003598_040

Information

Type transcription factor
Description TF Family: HB
Location Contig3598: 111719-119052
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25390g
description POPTRDRAFT_832118; class III HD-Zip family protein
nr
ID XP_012077376.1
description PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
swissprot
ID Q39123
description Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1
trembl
ID A0A067KD60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07732 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37084: 111825-113102 , PASA_asmbl_37086: 114225-115375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003598_040 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
2 Hb_035318_010 0.1725028586 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
3 Hb_001488_340 0.1808949282 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
4 Hb_003297_010 0.1816932346 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
5 Hb_001218_050 0.1851918325 - - Ribosome-binding protein, putative [Ricinus communis]
6 Hb_003064_030 0.1860913335 - - bromodomain-containing protein, putative [Ricinus communis]
7 Hb_141532_010 0.1862367726 - - PREDICTED: protein SMG9-like [Jatropha curcas]
8 Hb_003891_070 0.1910717737 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
9 Hb_000787_170 0.1937003035 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
10 Hb_005085_020 0.1943457339 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
11 Hb_170487_010 0.1943647961 - - -
12 Hb_000258_320 0.1960053524 - - -
13 Hb_000175_090 0.1963545495 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000336_270 0.197299286 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
15 Hb_128496_010 0.197554904 - - unnamed protein product [Vitis vinifera]
16 Hb_188996_010 0.1991761613 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000392_050 0.2027963904 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
18 Hb_005565_040 0.202816896 - - conserved hypothetical protein [Ricinus communis]
19 Hb_135377_010 0.2067706937 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
20 Hb_000785_030 0.2072821862 - - hypothetical protein RCOM_0808030 [Ricinus communis]

Gene co-expression network

sample Hb_003598_040 Hb_003598_040 Hb_035318_010 Hb_035318_010 Hb_003598_040--Hb_035318_010 Hb_001488_340 Hb_001488_340 Hb_003598_040--Hb_001488_340 Hb_003297_010 Hb_003297_010 Hb_003598_040--Hb_003297_010 Hb_001218_050 Hb_001218_050 Hb_003598_040--Hb_001218_050 Hb_003064_030 Hb_003064_030 Hb_003598_040--Hb_003064_030 Hb_141532_010 Hb_141532_010 Hb_003598_040--Hb_141532_010 Hb_001910_020 Hb_001910_020 Hb_035318_010--Hb_001910_020 Hb_000787_170 Hb_000787_170 Hb_035318_010--Hb_000787_170 Hb_001882_040 Hb_001882_040 Hb_035318_010--Hb_001882_040 Hb_152453_010 Hb_152453_010 Hb_035318_010--Hb_152453_010 Hb_000392_050 Hb_000392_050 Hb_035318_010--Hb_000392_050 Hb_000939_060 Hb_000939_060 Hb_035318_010--Hb_000939_060 Hb_005085_020 Hb_005085_020 Hb_001488_340--Hb_005085_020 Hb_074449_010 Hb_074449_010 Hb_001488_340--Hb_074449_010 Hb_001488_340--Hb_001882_040 Hb_000270_870 Hb_000270_870 Hb_001488_340--Hb_000270_870 Hb_001141_410 Hb_001141_410 Hb_001488_340--Hb_001141_410 Hb_000198_070 Hb_000198_070 Hb_001488_340--Hb_000198_070 Hb_000175_090 Hb_000175_090 Hb_003297_010--Hb_000175_090 Hb_087762_010 Hb_087762_010 Hb_003297_010--Hb_087762_010 Hb_012114_060 Hb_012114_060 Hb_003297_010--Hb_012114_060 Hb_007778_020 Hb_007778_020 Hb_003297_010--Hb_007778_020 Hb_007558_010 Hb_007558_010 Hb_003297_010--Hb_007558_010 Hb_004137_030 Hb_004137_030 Hb_003297_010--Hb_004137_030 Hb_172141_010 Hb_172141_010 Hb_001218_050--Hb_172141_010 Hb_005565_040 Hb_005565_040 Hb_001218_050--Hb_005565_040 Hb_001025_110 Hb_001025_110 Hb_001218_050--Hb_001025_110 Hb_001052_040 Hb_001052_040 Hb_001218_050--Hb_001052_040 Hb_001218_050--Hb_012114_060 Hb_003891_070 Hb_003891_070 Hb_001218_050--Hb_003891_070 Hb_009620_030 Hb_009620_030 Hb_003064_030--Hb_009620_030 Hb_080147_040 Hb_080147_040 Hb_003064_030--Hb_080147_040 Hb_003064_030--Hb_035318_010 Hb_121729_020 Hb_121729_020 Hb_003064_030--Hb_121729_020 Hb_003064_030--Hb_000787_170 Hb_010128_070 Hb_010128_070 Hb_003064_030--Hb_010128_070 Hb_141532_010--Hb_000175_090 Hb_002292_010 Hb_002292_010 Hb_141532_010--Hb_002292_010 Hb_001142_050 Hb_001142_050 Hb_141532_010--Hb_001142_050 Hb_004363_010 Hb_004363_010 Hb_141532_010--Hb_004363_010 Hb_141532_010--Hb_005565_040 Hb_007007_050 Hb_007007_050 Hb_141532_010--Hb_007007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.6895 9.94792 13.2549 14.9674 9.80621 22.5679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.9934 15.0901 1.28491 3.95746 4.02233

CAGE analysis