Hb_001218_050

Information

Type -
Description -
Location Contig1218: 71773-79904
Sequence    

Annotation

kegg
ID rcu:RCOM_1035180
description Ribosome-binding protein, putative
nr
ID XP_002513917.1
description Ribosome-binding protein, putative [Ricinus communis]
swissprot
ID Q9LME2
description Synaptonemal complex protein 1 OS=Arabidopsis thaliana GN=ZYP1A PE=2 SV=1
trembl
ID B9RJJ8
description Ribosome-binding protein, putative OS=Ricinus communis GN=RCOM_1035180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06611: 74860-75392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001218_050 0.0 - - Ribosome-binding protein, putative [Ricinus communis]
2 Hb_172141_010 0.1381931352 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
3 Hb_005565_040 0.1432089332 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001025_110 0.1435490941 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001052_040 0.1466514269 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
6 Hb_012114_060 0.1501441261 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
7 Hb_003891_070 0.1502268162 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
8 Hb_015354_010 0.1510739817 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_002043_090 0.1519456803 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
10 Hb_000336_270 0.1543613417 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_167234_010 0.1552020061 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
12 Hb_000785_030 0.1585572259 - - hypothetical protein RCOM_0808030 [Ricinus communis]
13 Hb_000211_120 0.158823081 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
14 Hb_000270_460 0.1590412405 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
15 Hb_063716_080 0.1591882144 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
16 Hb_035318_010 0.160519291 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
17 Hb_001865_040 0.1612994845 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_000282_030 0.1615172705 - - K(+) efflux antiporter 4 [Glycine soja]
19 Hb_170487_010 0.1617816009 - - -
20 Hb_001105_010 0.1618664465 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001218_050 Hb_001218_050 Hb_172141_010 Hb_172141_010 Hb_001218_050--Hb_172141_010 Hb_005565_040 Hb_005565_040 Hb_001218_050--Hb_005565_040 Hb_001025_110 Hb_001025_110 Hb_001218_050--Hb_001025_110 Hb_001052_040 Hb_001052_040 Hb_001218_050--Hb_001052_040 Hb_012114_060 Hb_012114_060 Hb_001218_050--Hb_012114_060 Hb_003891_070 Hb_003891_070 Hb_001218_050--Hb_003891_070 Hb_008749_060 Hb_008749_060 Hb_172141_010--Hb_008749_060 Hb_011386_040 Hb_011386_040 Hb_172141_010--Hb_011386_040 Hb_000548_050 Hb_000548_050 Hb_172141_010--Hb_000548_050 Hb_000291_190 Hb_000291_190 Hb_172141_010--Hb_000291_190 Hb_000865_080 Hb_000865_080 Hb_172141_010--Hb_000865_080 Hb_007403_050 Hb_007403_050 Hb_172141_010--Hb_007403_050 Hb_005565_040--Hb_012114_060 Hb_000092_100 Hb_000092_100 Hb_005565_040--Hb_000092_100 Hb_001105_010 Hb_001105_010 Hb_005565_040--Hb_001105_010 Hb_029920_050 Hb_029920_050 Hb_005565_040--Hb_029920_050 Hb_005565_040--Hb_000548_050 Hb_011942_080 Hb_011942_080 Hb_005565_040--Hb_011942_080 Hb_001769_080 Hb_001769_080 Hb_001025_110--Hb_001769_080 Hb_003641_060 Hb_003641_060 Hb_001025_110--Hb_003641_060 Hb_022181_030 Hb_022181_030 Hb_001025_110--Hb_022181_030 Hb_033834_030 Hb_033834_030 Hb_001025_110--Hb_033834_030 Hb_000785_080 Hb_000785_080 Hb_001025_110--Hb_000785_080 Hb_000302_310 Hb_000302_310 Hb_001025_110--Hb_000302_310 Hb_015354_010 Hb_015354_010 Hb_001052_040--Hb_015354_010 Hb_000886_060 Hb_000886_060 Hb_001052_040--Hb_000886_060 Hb_000152_670 Hb_000152_670 Hb_001052_040--Hb_000152_670 Hb_002742_080 Hb_002742_080 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_173178_020 Hb_173178_020 Hb_001052_040--Hb_173178_020 Hb_012114_060--Hb_000548_050 Hb_052764_050 Hb_052764_050 Hb_012114_060--Hb_052764_050 Hb_000394_190 Hb_000394_190 Hb_012114_060--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_012114_060--Hb_001168_040 Hb_000787_170 Hb_000787_170 Hb_012114_060--Hb_000787_170 Hb_116349_060 Hb_116349_060 Hb_003891_070--Hb_116349_060 Hb_010053_040 Hb_010053_040 Hb_003891_070--Hb_010053_040 Hb_001269_200 Hb_001269_200 Hb_003891_070--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_003891_070--Hb_001807_010 Hb_002928_010 Hb_002928_010 Hb_003891_070--Hb_002928_010 Hb_000735_050 Hb_000735_050 Hb_003891_070--Hb_000735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59579 1.11789 0.860517 0.97415 0.576164 1.5414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.566096 0.580444 0.12874 0.718151 0.143553

CAGE analysis