Hb_008749_060

Information

Type -
Description -
Location Contig8749: 50180-51277
Sequence    

Annotation

kegg
ID rcu:RCOM_0333480
description hypothetical protein
nr
ID XP_012079371.1
description PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12511 PE=4 SV=1
Gene Ontology
ID GO:0005774
description nhl domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61241: 50381-50707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008749_060 0.0 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
2 Hb_034506_010 0.1029463018 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
3 Hb_001377_070 0.1078842987 - - conserved hypothetical protein [Ricinus communis]
4 Hb_172141_010 0.1157612679 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
5 Hb_000574_100 0.1187730054 - - DEAD-box protein abstrakt [Populus trichocarpa]
6 Hb_093432_010 0.1203615562 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
7 Hb_001135_130 0.1205193591 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
8 Hb_118026_010 0.1263215842 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
9 Hb_000215_190 0.1277218861 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
10 Hb_011310_210 0.1277988326 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
11 Hb_000070_080 0.1294149928 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
12 Hb_000523_040 0.1296842954 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
13 Hb_000755_030 0.1302179354 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
14 Hb_000162_280 0.1304178159 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
15 Hb_000645_120 0.1308586678 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
16 Hb_000836_270 0.1314878838 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
17 Hb_008159_020 0.1315481697 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_012023_020 0.1316408386 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
19 Hb_000592_090 0.1325053737 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
20 Hb_000083_160 0.1325995736 - - Cell division cycle protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008749_060 Hb_008749_060 Hb_034506_010 Hb_034506_010 Hb_008749_060--Hb_034506_010 Hb_001377_070 Hb_001377_070 Hb_008749_060--Hb_001377_070 Hb_172141_010 Hb_172141_010 Hb_008749_060--Hb_172141_010 Hb_000574_100 Hb_000574_100 Hb_008749_060--Hb_000574_100 Hb_093432_010 Hb_093432_010 Hb_008749_060--Hb_093432_010 Hb_001135_130 Hb_001135_130 Hb_008749_060--Hb_001135_130 Hb_011310_210 Hb_011310_210 Hb_034506_010--Hb_011310_210 Hb_006951_020 Hb_006951_020 Hb_034506_010--Hb_006951_020 Hb_000205_300 Hb_000205_300 Hb_034506_010--Hb_000205_300 Hb_034506_010--Hb_001135_130 Hb_008643_040 Hb_008643_040 Hb_034506_010--Hb_008643_040 Hb_004310_020 Hb_004310_020 Hb_034506_010--Hb_004310_020 Hb_001347_040 Hb_001347_040 Hb_001377_070--Hb_001347_040 Hb_000116_060 Hb_000116_060 Hb_001377_070--Hb_000116_060 Hb_008159_020 Hb_008159_020 Hb_001377_070--Hb_008159_020 Hb_111198_010 Hb_111198_010 Hb_001377_070--Hb_111198_010 Hb_000732_120 Hb_000732_120 Hb_001377_070--Hb_000732_120 Hb_008511_030 Hb_008511_030 Hb_001377_070--Hb_008511_030 Hb_011386_040 Hb_011386_040 Hb_172141_010--Hb_011386_040 Hb_000548_050 Hb_000548_050 Hb_172141_010--Hb_000548_050 Hb_000291_190 Hb_000291_190 Hb_172141_010--Hb_000291_190 Hb_000865_080 Hb_000865_080 Hb_172141_010--Hb_000865_080 Hb_007403_050 Hb_007403_050 Hb_172141_010--Hb_007403_050 Hb_002615_090 Hb_002615_090 Hb_000574_100--Hb_002615_090 Hb_000922_370 Hb_000922_370 Hb_000574_100--Hb_000922_370 Hb_001472_090 Hb_001472_090 Hb_000574_100--Hb_001472_090 Hb_000941_130 Hb_000941_130 Hb_000574_100--Hb_000941_130 Hb_000574_070 Hb_000574_070 Hb_000574_100--Hb_000574_070 Hb_000878_180 Hb_000878_180 Hb_000574_100--Hb_000878_180 Hb_009969_030 Hb_009969_030 Hb_093432_010--Hb_009969_030 Hb_000755_030 Hb_000755_030 Hb_093432_010--Hb_000755_030 Hb_003966_030 Hb_003966_030 Hb_093432_010--Hb_003966_030 Hb_000283_070 Hb_000283_070 Hb_093432_010--Hb_000283_070 Hb_093432_010--Hb_000574_100 Hb_003124_130 Hb_003124_130 Hb_093432_010--Hb_003124_130 Hb_001135_130--Hb_004310_020 Hb_000982_060 Hb_000982_060 Hb_001135_130--Hb_000982_060 Hb_000442_150 Hb_000442_150 Hb_001135_130--Hb_000442_150 Hb_001135_130--Hb_000205_300 Hb_002235_210 Hb_002235_210 Hb_001135_130--Hb_002235_210 Hb_057878_010 Hb_057878_010 Hb_001135_130--Hb_057878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63841 2.33247 1.30908 1.77729 1.42307 3.3569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.903274 1.10125 1.57837 1.52535 0.292529

CAGE analysis