Hb_172141_010

Information

Type -
Description -
Location Contig172141: 249-584
Sequence    

Annotation

kegg
ID rcu:RCOM_0343440
description hypothetical protein
nr
ID XP_012080866.1
description PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16221: 1-601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172141_010 0.0 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
2 Hb_008749_060 0.1157612679 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
3 Hb_011386_040 0.1167936536 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
4 Hb_000548_050 0.1177964727 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
5 Hb_000291_190 0.1188404931 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
6 Hb_000865_080 0.1202092676 - - arsenite-resistance protein, putative [Ricinus communis]
7 Hb_007403_050 0.1209741351 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
8 Hb_003299_030 0.1216077978 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
9 Hb_173178_020 0.1229000704 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
10 Hb_000352_090 0.1237331182 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
11 Hb_001052_040 0.1241909342 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
12 Hb_000215_190 0.1242965249 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
13 Hb_004032_180 0.1247710579 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
14 Hb_008511_030 0.1262012044 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
15 Hb_002043_090 0.1281861596 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
16 Hb_000158_130 0.1283019037 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
17 Hb_000224_060 0.1284064892 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
18 Hb_000755_030 0.1285796278 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
19 Hb_034506_010 0.1286610237 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
20 Hb_000939_060 0.1306958815 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]

Gene co-expression network

sample Hb_172141_010 Hb_172141_010 Hb_008749_060 Hb_008749_060 Hb_172141_010--Hb_008749_060 Hb_011386_040 Hb_011386_040 Hb_172141_010--Hb_011386_040 Hb_000548_050 Hb_000548_050 Hb_172141_010--Hb_000548_050 Hb_000291_190 Hb_000291_190 Hb_172141_010--Hb_000291_190 Hb_000865_080 Hb_000865_080 Hb_172141_010--Hb_000865_080 Hb_007403_050 Hb_007403_050 Hb_172141_010--Hb_007403_050 Hb_034506_010 Hb_034506_010 Hb_008749_060--Hb_034506_010 Hb_001377_070 Hb_001377_070 Hb_008749_060--Hb_001377_070 Hb_000574_100 Hb_000574_100 Hb_008749_060--Hb_000574_100 Hb_093432_010 Hb_093432_010 Hb_008749_060--Hb_093432_010 Hb_001135_130 Hb_001135_130 Hb_008749_060--Hb_001135_130 Hb_050847_020 Hb_050847_020 Hb_011386_040--Hb_050847_020 Hb_032202_110 Hb_032202_110 Hb_011386_040--Hb_032202_110 Hb_000771_180 Hb_000771_180 Hb_011386_040--Hb_000771_180 Hb_000140_080 Hb_000140_080 Hb_011386_040--Hb_000140_080 Hb_002045_150 Hb_002045_150 Hb_011386_040--Hb_002045_150 Hb_000136_090 Hb_000136_090 Hb_011386_040--Hb_000136_090 Hb_012114_060 Hb_012114_060 Hb_000548_050--Hb_012114_060 Hb_005565_040 Hb_005565_040 Hb_000548_050--Hb_005565_040 Hb_052764_050 Hb_052764_050 Hb_000548_050--Hb_052764_050 Hb_012799_110 Hb_012799_110 Hb_000548_050--Hb_012799_110 Hb_011942_080 Hb_011942_080 Hb_000548_050--Hb_011942_080 Hb_000394_190 Hb_000394_190 Hb_000548_050--Hb_000394_190 Hb_000291_190--Hb_000865_080 Hb_000224_060 Hb_000224_060 Hb_000291_190--Hb_000224_060 Hb_000025_360 Hb_000025_360 Hb_000291_190--Hb_000025_360 Hb_006586_050 Hb_006586_050 Hb_000291_190--Hb_006586_050 Hb_003878_140 Hb_003878_140 Hb_000291_190--Hb_003878_140 Hb_001616_050 Hb_001616_050 Hb_000291_190--Hb_001616_050 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000865_080--Hb_000025_360 Hb_000034_160 Hb_000034_160 Hb_007403_050--Hb_000034_160 Hb_011465_030 Hb_011465_030 Hb_007403_050--Hb_011465_030 Hb_001946_300 Hb_001946_300 Hb_007403_050--Hb_001946_300 Hb_007403_050--Hb_000363_130 Hb_004032_180 Hb_004032_180 Hb_007403_050--Hb_004032_180 Hb_000283_130 Hb_000283_130 Hb_007403_050--Hb_000283_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
155.111 135.206 64.5622 67.5963 89.4764 192.001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6156 65.645 54.6645 74.0529 8.10478

CAGE analysis