Hb_011377_010

Information

Type -
Description -
Location Contig11377: 6823-8355
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15950g
description POPTRDRAFT_757799; MutT/nudix family protein
nr
ID XP_011020913.1
description PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
swissprot
ID Q52K88
description Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1
trembl
ID B9GYV1
description MutT/nudix family protein OS=Populus trichocarpa GN=POPTR_0003s15950g PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04110: 7197-7696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011377_010 0.0 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
2 Hb_000165_120 0.2311324757 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
3 Hb_000692_210 0.2335421275 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
4 Hb_005725_230 0.2373057757 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
5 Hb_000836_610 0.2376871397 - - stem-specific protein TSJT1-like [Jatropha curcas]
6 Hb_001489_140 0.2456287227 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]
7 Hb_000915_150 0.2477280409 - - -
8 Hb_001123_220 0.2512997281 - - -
9 Hb_009659_030 0.2564917633 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
10 Hb_000256_120 0.2565865941 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
11 Hb_004102_050 0.2569593684 - - JHL25H03.10 [Jatropha curcas]
12 Hb_095471_020 0.2595018326 - - -
13 Hb_000296_010 0.2599721247 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
14 Hb_005839_100 0.2616901538 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
15 Hb_002783_200 0.2659413648 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
16 Hb_126648_010 0.2660845295 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
17 Hb_004611_030 0.2665986451 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
18 Hb_087587_010 0.2667039187 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_007777_010 0.2680417568 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
20 Hb_001486_140 0.2681894808 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]

Gene co-expression network

sample Hb_011377_010 Hb_011377_010 Hb_000165_120 Hb_000165_120 Hb_011377_010--Hb_000165_120 Hb_000692_210 Hb_000692_210 Hb_011377_010--Hb_000692_210 Hb_005725_230 Hb_005725_230 Hb_011377_010--Hb_005725_230 Hb_000836_610 Hb_000836_610 Hb_011377_010--Hb_000836_610 Hb_001489_140 Hb_001489_140 Hb_011377_010--Hb_001489_140 Hb_000915_150 Hb_000915_150 Hb_011377_010--Hb_000915_150 Hb_087587_010 Hb_087587_010 Hb_000165_120--Hb_087587_010 Hb_002259_110 Hb_002259_110 Hb_000165_120--Hb_002259_110 Hb_001373_160 Hb_001373_160 Hb_000165_120--Hb_001373_160 Hb_000165_110 Hb_000165_110 Hb_000165_120--Hb_000165_110 Hb_010346_020 Hb_010346_020 Hb_000165_120--Hb_010346_020 Hb_002553_010 Hb_002553_010 Hb_000165_120--Hb_002553_010 Hb_002518_200 Hb_002518_200 Hb_000692_210--Hb_002518_200 Hb_004837_220 Hb_004837_220 Hb_000692_210--Hb_004837_220 Hb_003747_050 Hb_003747_050 Hb_000692_210--Hb_003747_050 Hb_000003_740 Hb_000003_740 Hb_000692_210--Hb_000003_740 Hb_005000_140 Hb_005000_140 Hb_000692_210--Hb_005000_140 Hb_080147_020 Hb_080147_020 Hb_000692_210--Hb_080147_020 Hb_000317_160 Hb_000317_160 Hb_005725_230--Hb_000317_160 Hb_000098_030 Hb_000098_030 Hb_005725_230--Hb_000098_030 Hb_000296_010 Hb_000296_010 Hb_005725_230--Hb_000296_010 Hb_027746_020 Hb_027746_020 Hb_005725_230--Hb_027746_020 Hb_004137_100 Hb_004137_100 Hb_005725_230--Hb_004137_100 Hb_002685_150 Hb_002685_150 Hb_005725_230--Hb_002685_150 Hb_002641_050 Hb_002641_050 Hb_000836_610--Hb_002641_050 Hb_068492_010 Hb_068492_010 Hb_000836_610--Hb_068492_010 Hb_001842_060 Hb_001842_060 Hb_000836_610--Hb_001842_060 Hb_042083_060 Hb_042083_060 Hb_000836_610--Hb_042083_060 Hb_000051_030 Hb_000051_030 Hb_000836_610--Hb_000051_030 Hb_001195_220 Hb_001195_220 Hb_000836_610--Hb_001195_220 Hb_001489_140--Hb_000915_150 Hb_000256_120 Hb_000256_120 Hb_001489_140--Hb_000256_120 Hb_000164_150 Hb_000164_150 Hb_001489_140--Hb_000164_150 Hb_000849_050 Hb_000849_050 Hb_001489_140--Hb_000849_050 Hb_096473_010 Hb_096473_010 Hb_001489_140--Hb_096473_010 Hb_084858_010 Hb_084858_010 Hb_000915_150--Hb_084858_010 Hb_057247_010 Hb_057247_010 Hb_000915_150--Hb_057247_010 Hb_000915_150--Hb_000849_050 Hb_172572_010 Hb_172572_010 Hb_000915_150--Hb_172572_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13061 1.10709 2.53414 0.885797 0.27364 1.05155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.253404 0 1.90718 0.125338

CAGE analysis