Hb_000165_110

Information

Type -
Description -
Location Contig165: 106063-106500
Sequence    

Annotation

kegg
ID obr:102704203
description ankyrin repeat domain-containing protein 65-like
nr
ID AFK36051.1
description unknown [Medicago truncatula]
swissprot
ID Q4UMH6
description Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=3 SV=1
trembl
ID M0TJS6
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005515
description serine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15195: 105814-107332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_110 0.0 - - unknown [Medicago truncatula]
2 Hb_000165_120 0.1388945917 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
3 Hb_005568_090 0.1442638183 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_001114_020 0.1470608507 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
5 Hb_004525_070 0.1693293062 - - abhydrolase domain containing, putative [Ricinus communis]
6 Hb_000058_050 0.1711041814 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
7 Hb_002291_060 0.1804507043 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
8 Hb_009659_030 0.1872135265 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
9 Hb_002259_110 0.1891281878 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
10 Hb_007777_010 0.1895656661 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
11 Hb_010346_020 0.190695212 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
12 Hb_021530_010 0.1926364198 - - PREDICTED: la protein 1 [Jatropha curcas]
13 Hb_002609_190 0.1950506489 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
14 Hb_005610_080 0.1953718018 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000189_390 0.1961066474 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
16 Hb_001373_160 0.1997652658 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
17 Hb_001817_130 0.2003682935 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
18 Hb_033554_020 0.2011150538 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
19 Hb_000890_010 0.2018880438 - - conserved hypothetical protein [Ricinus communis]
20 Hb_075203_010 0.2021498735 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000165_110 Hb_000165_110 Hb_000165_120 Hb_000165_120 Hb_000165_110--Hb_000165_120 Hb_005568_090 Hb_005568_090 Hb_000165_110--Hb_005568_090 Hb_001114_020 Hb_001114_020 Hb_000165_110--Hb_001114_020 Hb_004525_070 Hb_004525_070 Hb_000165_110--Hb_004525_070 Hb_000058_050 Hb_000058_050 Hb_000165_110--Hb_000058_050 Hb_002291_060 Hb_002291_060 Hb_000165_110--Hb_002291_060 Hb_087587_010 Hb_087587_010 Hb_000165_120--Hb_087587_010 Hb_002259_110 Hb_002259_110 Hb_000165_120--Hb_002259_110 Hb_001373_160 Hb_001373_160 Hb_000165_120--Hb_001373_160 Hb_010346_020 Hb_010346_020 Hb_000165_120--Hb_010346_020 Hb_002553_010 Hb_002553_010 Hb_000165_120--Hb_002553_010 Hb_005568_090--Hb_000058_050 Hb_000890_010 Hb_000890_010 Hb_005568_090--Hb_000890_010 Hb_011609_010 Hb_011609_010 Hb_005568_090--Hb_011609_010 Hb_000189_390 Hb_000189_390 Hb_005568_090--Hb_000189_390 Hb_002609_190 Hb_002609_190 Hb_005568_090--Hb_002609_190 Hb_001114_020--Hb_000165_120 Hb_001817_130 Hb_001817_130 Hb_001114_020--Hb_001817_130 Hb_007777_010 Hb_007777_010 Hb_001114_020--Hb_007777_010 Hb_025964_040 Hb_025964_040 Hb_001114_020--Hb_025964_040 Hb_001114_020--Hb_010346_020 Hb_001662_040 Hb_001662_040 Hb_004525_070--Hb_001662_040 Hb_009265_050 Hb_009265_050 Hb_004525_070--Hb_009265_050 Hb_033554_020 Hb_033554_020 Hb_004525_070--Hb_033554_020 Hb_004525_070--Hb_002291_060 Hb_009659_030 Hb_009659_030 Hb_004525_070--Hb_009659_030 Hb_004525_070--Hb_001373_160 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_001196_080 Hb_001196_080 Hb_000058_050--Hb_001196_080 Hb_000077_120 Hb_000077_120 Hb_002291_060--Hb_000077_120 Hb_044155_010 Hb_044155_010 Hb_002291_060--Hb_044155_010 Hb_000139_220 Hb_000139_220 Hb_002291_060--Hb_000139_220 Hb_000345_490 Hb_000345_490 Hb_002291_060--Hb_000345_490 Hb_010287_030 Hb_010287_030 Hb_002291_060--Hb_010287_030 Hb_172257_010 Hb_172257_010 Hb_002291_060--Hb_172257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1026 21.2991 27.6643 5.61382 14.2166 7.42518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.661386 1.521 14.0697 7.17453

CAGE analysis