Hb_096473_010

Information

Type -
Description -
Location Contig96473: 73-642
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096473_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_010423_010 0.1620217887 - - -
3 Hb_000108_040 0.2286143042 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
4 Hb_000197_170 0.2360687149 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001004_050 0.2389087483 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
6 Hb_022593_030 0.250407417 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_001369_560 0.2507058815 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
8 Hb_002325_030 0.2614459582 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
9 Hb_000077_440 0.2638923656 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
10 Hb_001269_120 0.2704859532 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
11 Hb_001489_140 0.2721157367 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]
12 Hb_001386_100 0.2733435488 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor PHERES 1-like [Jatropha curcas]
13 Hb_000007_380 0.2754963543 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
14 Hb_000397_140 0.2772203872 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
15 Hb_001258_070 0.2808037809 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002641_050 0.2900994867 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
17 Hb_004667_040 0.2922419531 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002447_160 0.2943428994 - - -
19 Hb_001898_170 0.2989206553 - - conserved hypothetical protein [Ricinus communis]
20 Hb_013938_010 0.3030245127 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]

Gene co-expression network

sample Hb_096473_010 Hb_096473_010 Hb_010423_010 Hb_010423_010 Hb_096473_010--Hb_010423_010 Hb_000108_040 Hb_000108_040 Hb_096473_010--Hb_000108_040 Hb_000197_170 Hb_000197_170 Hb_096473_010--Hb_000197_170 Hb_001004_050 Hb_001004_050 Hb_096473_010--Hb_001004_050 Hb_022593_030 Hb_022593_030 Hb_096473_010--Hb_022593_030 Hb_001369_560 Hb_001369_560 Hb_096473_010--Hb_001369_560 Hb_010423_010--Hb_022593_030 Hb_010423_010--Hb_001369_560 Hb_010423_010--Hb_000108_040 Hb_003442_010 Hb_003442_010 Hb_010423_010--Hb_003442_010 Hb_010423_010--Hb_001004_050 Hb_002044_110 Hb_002044_110 Hb_000108_040--Hb_002044_110 Hb_001628_030 Hb_001628_030 Hb_000108_040--Hb_001628_030 Hb_004544_010 Hb_004544_010 Hb_000108_040--Hb_004544_010 Hb_004631_100 Hb_004631_100 Hb_000108_040--Hb_004631_100 Hb_004785_160 Hb_004785_160 Hb_000108_040--Hb_004785_160 Hb_008725_030 Hb_008725_030 Hb_000108_040--Hb_008725_030 Hb_000413_150 Hb_000413_150 Hb_000197_170--Hb_000413_150 Hb_003032_060 Hb_003032_060 Hb_000197_170--Hb_003032_060 Hb_005276_030 Hb_005276_030 Hb_000197_170--Hb_005276_030 Hb_047560_010 Hb_047560_010 Hb_000197_170--Hb_047560_010 Hb_093385_010 Hb_093385_010 Hb_000197_170--Hb_093385_010 Hb_009979_010 Hb_009979_010 Hb_001004_050--Hb_009979_010 Hb_002447_160 Hb_002447_160 Hb_001004_050--Hb_002447_160 Hb_183192_010 Hb_183192_010 Hb_001004_050--Hb_183192_010 Hb_001141_200 Hb_001141_200 Hb_001004_050--Hb_001141_200 Hb_004021_090 Hb_004021_090 Hb_001004_050--Hb_004021_090 Hb_022593_030--Hb_001369_560 Hb_022593_030--Hb_003442_010 Hb_009913_010 Hb_009913_010 Hb_022593_030--Hb_009913_010 Hb_007441_060 Hb_007441_060 Hb_022593_030--Hb_007441_060 Hb_005147_050 Hb_005147_050 Hb_022593_030--Hb_005147_050 Hb_032050_070 Hb_032050_070 Hb_001369_560--Hb_032050_070 Hb_002035_030 Hb_002035_030 Hb_001369_560--Hb_002035_030 Hb_001369_560--Hb_003442_010 Hb_000661_280 Hb_000661_280 Hb_001369_560--Hb_000661_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0937712 0.0797486 0.183574 0.106678 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.105809 0

CAGE analysis