Hb_005276_030

Information

Type -
Description -
Location Contig5276: 18560-20002
Sequence    

Annotation

kegg
ID rcu:RCOM_0557780
description Patatin T5 precursor, putative
nr
ID XP_012092238.1
description PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
swissprot
ID Q93ZQ3
description Probable inactive patatin-like protein 9 OS=Arabidopsis thaliana GN=PLP9 PE=2 SV=1
trembl
ID A0A067JCC2
description Patatin OS=Jatropha curcas GN=JCGZ_21928 PE=3 SV=1
Gene Ontology
ID GO:0016787
description probable inactive patatin-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47078: 18332-20007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_030 0.0 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
2 Hb_006775_070 0.1744910177 - - zinc finger protein, putative [Ricinus communis]
3 Hb_008250_020 0.2150979691 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
4 Hb_173029_030 0.2175139288 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000069_300 0.2204584328 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_000197_170 0.2215040258 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001536_020 0.2215696844 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
8 Hb_006289_020 0.2219602676 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
9 Hb_000260_610 0.2240755827 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
10 Hb_000753_170 0.227331989 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001541_190 0.2316886161 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
12 Hb_008864_100 0.2324527932 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
13 Hb_002965_160 0.2338766176 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
14 Hb_003032_060 0.2351302875 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_000260_650 0.2370121722 - - PREDICTED: protein PFC0760c [Jatropha curcas]
16 Hb_001862_050 0.2370395889 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
17 Hb_002325_030 0.2441411185 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
18 Hb_006060_010 0.2441696216 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
19 Hb_003878_060 0.245099744 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
20 Hb_003667_020 0.246535173 - - conserved hypothetical protein 16 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005276_030 Hb_005276_030 Hb_006775_070 Hb_006775_070 Hb_005276_030--Hb_006775_070 Hb_008250_020 Hb_008250_020 Hb_005276_030--Hb_008250_020 Hb_173029_030 Hb_173029_030 Hb_005276_030--Hb_173029_030 Hb_000069_300 Hb_000069_300 Hb_005276_030--Hb_000069_300 Hb_000197_170 Hb_000197_170 Hb_005276_030--Hb_000197_170 Hb_001536_020 Hb_001536_020 Hb_005276_030--Hb_001536_020 Hb_176472_020 Hb_176472_020 Hb_006775_070--Hb_176472_020 Hb_000959_190 Hb_000959_190 Hb_006775_070--Hb_000959_190 Hb_000260_610 Hb_000260_610 Hb_006775_070--Hb_000260_610 Hb_012787_030 Hb_012787_030 Hb_006775_070--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_006775_070--Hb_000732_030 Hb_002518_200 Hb_002518_200 Hb_006775_070--Hb_002518_200 Hb_006153_010 Hb_006153_010 Hb_008250_020--Hb_006153_010 Hb_002897_010 Hb_002897_010 Hb_008250_020--Hb_002897_010 Hb_001235_160 Hb_001235_160 Hb_008250_020--Hb_001235_160 Hb_000395_120 Hb_000395_120 Hb_008250_020--Hb_000395_120 Hb_008250_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_008250_020--Hb_002463_050 Hb_173029_030--Hb_001536_020 Hb_001638_120 Hb_001638_120 Hb_173029_030--Hb_001638_120 Hb_022092_040 Hb_022092_040 Hb_173029_030--Hb_022092_040 Hb_000308_010 Hb_000308_010 Hb_173029_030--Hb_000308_010 Hb_000042_390 Hb_000042_390 Hb_173029_030--Hb_000042_390 Hb_173029_030--Hb_008250_020 Hb_001541_190 Hb_001541_190 Hb_000069_300--Hb_001541_190 Hb_008511_040 Hb_008511_040 Hb_000069_300--Hb_008511_040 Hb_001862_050 Hb_001862_050 Hb_000069_300--Hb_001862_050 Hb_006133_020 Hb_006133_020 Hb_000069_300--Hb_006133_020 Hb_001141_050 Hb_001141_050 Hb_000069_300--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_000069_300--Hb_001922_110 Hb_000413_150 Hb_000413_150 Hb_000197_170--Hb_000413_150 Hb_003032_060 Hb_003032_060 Hb_000197_170--Hb_003032_060 Hb_047560_010 Hb_047560_010 Hb_000197_170--Hb_047560_010 Hb_096473_010 Hb_096473_010 Hb_000197_170--Hb_096473_010 Hb_093385_010 Hb_093385_010 Hb_000197_170--Hb_093385_010 Hb_001536_020--Hb_000042_390 Hb_001347_030 Hb_001347_030 Hb_001536_020--Hb_001347_030 Hb_000753_170 Hb_000753_170 Hb_001536_020--Hb_000753_170 Hb_010863_030 Hb_010863_030 Hb_001536_020--Hb_010863_030 Hb_012653_010 Hb_012653_010 Hb_001536_020--Hb_012653_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.77528 4.33391 18.0429 11.2735 0.55003 0.0665122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.288305 0.161988 1.0239 1.11638 1.40702

CAGE analysis