Hb_003032_060

Information

Type -
Description -
Location Contig3032: 91413-96872
Sequence    

Annotation

kegg
ID rcu:RCOM_0825910
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002529351.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q69VD5
description Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1
trembl
ID B9STN2
description Protein argonaute OS=Ricinus communis GN=RCOM_0825910 PE=3 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute pnh1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31996: 91892-92480 , PASA_asmbl_31997: 92502-93250 , PASA_asmbl_31998: 93453-96932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003032_060 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_003712_010 0.152984541 - - protein binding protein, putative [Ricinus communis]
3 Hb_000193_060 0.158520667 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
4 Hb_006153_010 0.1629665729 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
5 Hb_076771_010 0.167346285 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_008250_020 0.1704751205 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
7 Hb_000878_120 0.1757469564 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
8 Hb_036029_020 0.1786778094 - - PREDICTED: patellin-3-like [Jatropha curcas]
9 Hb_002639_050 0.1817710547 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_006120_130 0.1846083635 - - -
11 Hb_000010_220 0.1876480973 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
12 Hb_007749_020 0.1880431639 - - receptor-kinase, putative [Ricinus communis]
13 Hb_107658_010 0.1894903262 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
14 Hb_014990_010 0.1907678664 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v100031791mg, partial [Citrus clementina]
15 Hb_001430_010 0.191584232 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
16 Hb_003055_080 0.1927619023 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
17 Hb_000139_050 0.1955777 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
18 Hb_006120_210 0.2033677252 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_148346_010 0.2043676916 - - -
20 Hb_002233_080 0.2044166469 - - hypothetical protein JCGZ_00222 [Jatropha curcas]

Gene co-expression network

sample Hb_003032_060 Hb_003032_060 Hb_003712_010 Hb_003712_010 Hb_003032_060--Hb_003712_010 Hb_000193_060 Hb_000193_060 Hb_003032_060--Hb_000193_060 Hb_006153_010 Hb_006153_010 Hb_003032_060--Hb_006153_010 Hb_076771_010 Hb_076771_010 Hb_003032_060--Hb_076771_010 Hb_008250_020 Hb_008250_020 Hb_003032_060--Hb_008250_020 Hb_000878_120 Hb_000878_120 Hb_003032_060--Hb_000878_120 Hb_000635_190 Hb_000635_190 Hb_003712_010--Hb_000635_190 Hb_096878_010 Hb_096878_010 Hb_003712_010--Hb_096878_010 Hb_115445_010 Hb_115445_010 Hb_003712_010--Hb_115445_010 Hb_006721_060 Hb_006721_060 Hb_003712_010--Hb_006721_060 Hb_133508_020 Hb_133508_020 Hb_003712_010--Hb_133508_020 Hb_185830_090 Hb_185830_090 Hb_003712_010--Hb_185830_090 Hb_003119_040 Hb_003119_040 Hb_000193_060--Hb_003119_040 Hb_000395_120 Hb_000395_120 Hb_000193_060--Hb_000395_120 Hb_000193_060--Hb_000878_120 Hb_006060_010 Hb_006060_010 Hb_000193_060--Hb_006060_010 Hb_015037_010 Hb_015037_010 Hb_000193_060--Hb_015037_010 Hb_001377_370 Hb_001377_370 Hb_000193_060--Hb_001377_370 Hb_006153_010--Hb_008250_020 Hb_006153_010--Hb_003119_040 Hb_006153_010--Hb_000878_120 Hb_000260_610 Hb_000260_610 Hb_006153_010--Hb_000260_610 Hb_006153_010--Hb_000193_060 Hb_006153_010--Hb_015037_010 Hb_002676_110 Hb_002676_110 Hb_076771_010--Hb_002676_110 Hb_002233_080 Hb_002233_080 Hb_076771_010--Hb_002233_080 Hb_001663_090 Hb_001663_090 Hb_076771_010--Hb_001663_090 Hb_029622_090 Hb_029622_090 Hb_076771_010--Hb_029622_090 Hb_000010_220 Hb_000010_220 Hb_076771_010--Hb_000010_220 Hb_010721_010 Hb_010721_010 Hb_076771_010--Hb_010721_010 Hb_002897_010 Hb_002897_010 Hb_008250_020--Hb_002897_010 Hb_001235_160 Hb_001235_160 Hb_008250_020--Hb_001235_160 Hb_008250_020--Hb_000395_120 Hb_008250_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_008250_020--Hb_002463_050 Hb_003055_080 Hb_003055_080 Hb_000878_120--Hb_003055_080 Hb_006351_030 Hb_006351_030 Hb_000878_120--Hb_006351_030 Hb_000862_050 Hb_000862_050 Hb_000878_120--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_000878_120--Hb_008725_100 Hb_177195_010 Hb_177195_010 Hb_000878_120--Hb_177195_010 Hb_006120_130 Hb_006120_130 Hb_000878_120--Hb_006120_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.489577 1.86832 3.68322 4.13682 0.359724 0.0374304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.455164 0.262798

CAGE analysis