Hb_003712_010

Information

Type -
Description -
Location Contig3712: 31392-33314
Sequence    

Annotation

kegg
ID rcu:RCOM_1711740
description protein binding protein, putative
nr
ID XP_002524159.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDU0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1711740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38061: 31468-33278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003712_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000635_190 0.1364270218 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
3 Hb_096878_010 0.1393761474 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
4 Hb_115445_010 0.1401239786 - - -
5 Hb_006721_060 0.1445045585 - - RnaseH (mitochondrion) [Malus domestica]
6 Hb_133508_020 0.14487122 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
7 Hb_185830_090 0.1460461271 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003050_170 0.1520615394 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003032_060 0.152984541 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_000975_090 0.1561830247 - - Zeamatin precursor, putative [Ricinus communis]
11 Hb_006916_120 0.1574013457 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
12 Hb_000007_380 0.1583998782 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
13 Hb_014549_010 0.1632820574 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
14 Hb_170632_010 0.1641553779 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_006153_010 0.1679470626 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
16 Hb_003878_020 0.1710051731 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
17 Hb_004154_010 0.1713939947 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
18 Hb_000878_120 0.1718945939 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
19 Hb_000060_080 0.1725274964 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
20 Hb_000172_310 0.1803447632 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]

Gene co-expression network

sample Hb_003712_010 Hb_003712_010 Hb_000635_190 Hb_000635_190 Hb_003712_010--Hb_000635_190 Hb_096878_010 Hb_096878_010 Hb_003712_010--Hb_096878_010 Hb_115445_010 Hb_115445_010 Hb_003712_010--Hb_115445_010 Hb_006721_060 Hb_006721_060 Hb_003712_010--Hb_006721_060 Hb_133508_020 Hb_133508_020 Hb_003712_010--Hb_133508_020 Hb_185830_090 Hb_185830_090 Hb_003712_010--Hb_185830_090 Hb_000635_190--Hb_096878_010 Hb_000635_190--Hb_006721_060 Hb_003050_170 Hb_003050_170 Hb_000635_190--Hb_003050_170 Hb_000635_190--Hb_185830_090 Hb_000172_310 Hb_000172_310 Hb_000635_190--Hb_000172_310 Hb_004096_140 Hb_004096_140 Hb_000635_190--Hb_004096_140 Hb_096878_010--Hb_185830_090 Hb_096878_010--Hb_006721_060 Hb_096878_010--Hb_000172_310 Hb_096878_010--Hb_003050_170 Hb_096878_010--Hb_133508_020 Hb_115445_010--Hb_000635_190 Hb_115445_010--Hb_096878_010 Hb_115445_010--Hb_006721_060 Hb_071433_010 Hb_071433_010 Hb_115445_010--Hb_071433_010 Hb_115445_010--Hb_185830_090 Hb_006721_060--Hb_004096_140 Hb_006721_060--Hb_003050_170 Hb_006721_060--Hb_000172_310 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080 Hb_006916_120 Hb_006916_120 Hb_133508_020--Hb_006916_120 Hb_000152_590 Hb_000152_590 Hb_133508_020--Hb_000152_590 Hb_000975_090 Hb_000975_090 Hb_133508_020--Hb_000975_090 Hb_133508_020--Hb_185830_090 Hb_010672_010 Hb_010672_010 Hb_133508_020--Hb_010672_010 Hb_185830_090--Hb_003050_170 Hb_004154_010 Hb_004154_010 Hb_185830_090--Hb_004154_010 Hb_185830_090--Hb_006721_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30565 25.0635 52.4565 65.4529 2.11282 0.0101334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0263202 0 0 14.3063 0.21786

CAGE analysis