Hb_009913_010

Information

Type -
Description -
Location Contig9913: 6666-14867
Sequence    

Annotation

kegg
ID rcu:RCOM_0339650
description Nodulation receptor kinase precursor, putative (EC:2.7.11.30)
nr
ID XP_012071365.1
description PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q7XPY2
description Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1
trembl
ID A0A067LKD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01264 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64782: 6695-8439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009913_010 0.0 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
2 Hb_001122_010 0.1693783943 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_005147_050 0.1888511475 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
4 Hb_000083_130 0.1976285114 - - hypothetical protein RCOM_0884570 [Ricinus communis]
5 Hb_001103_040 0.2105247823 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
6 Hb_010270_010 0.2205026963 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_001091_030 0.2231131712 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
8 Hb_001369_560 0.2235885005 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
9 Hb_022593_030 0.2258413958 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_000586_060 0.2320363963 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
11 Hb_010253_020 0.2348003735 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_003442_010 0.2383226419 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
13 Hb_000803_100 0.2383549263 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
14 Hb_003384_070 0.2420838318 - - PREDICTED: methylesterase 17-like [Populus euphratica]
15 Hb_002781_010 0.2434457894 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
16 Hb_159411_010 0.2497810931 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_000256_120 0.2579654359 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
18 Hb_001817_130 0.2588094566 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
19 Hb_000521_310 0.259645189 - - -
20 Hb_000638_150 0.2600562564 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_009913_010 Hb_009913_010 Hb_001122_010 Hb_001122_010 Hb_009913_010--Hb_001122_010 Hb_005147_050 Hb_005147_050 Hb_009913_010--Hb_005147_050 Hb_000083_130 Hb_000083_130 Hb_009913_010--Hb_000083_130 Hb_001103_040 Hb_001103_040 Hb_009913_010--Hb_001103_040 Hb_010270_010 Hb_010270_010 Hb_009913_010--Hb_010270_010 Hb_001091_030 Hb_001091_030 Hb_009913_010--Hb_001091_030 Hb_001122_010--Hb_010270_010 Hb_002781_010 Hb_002781_010 Hb_001122_010--Hb_002781_010 Hb_000638_150 Hb_000638_150 Hb_001122_010--Hb_000638_150 Hb_000256_120 Hb_000256_120 Hb_001122_010--Hb_000256_120 Hb_039342_010 Hb_039342_010 Hb_001122_010--Hb_039342_010 Hb_000521_310 Hb_000521_310 Hb_005147_050--Hb_000521_310 Hb_007885_080 Hb_007885_080 Hb_005147_050--Hb_007885_080 Hb_005147_050--Hb_001122_010 Hb_022593_030 Hb_022593_030 Hb_005147_050--Hb_022593_030 Hb_007441_060 Hb_007441_060 Hb_005147_050--Hb_007441_060 Hb_010253_020 Hb_010253_020 Hb_000083_130--Hb_010253_020 Hb_001625_010 Hb_001625_010 Hb_000083_130--Hb_001625_010 Hb_001900_060 Hb_001900_060 Hb_000083_130--Hb_001900_060 Hb_159411_010 Hb_159411_010 Hb_000083_130--Hb_159411_010 Hb_000778_020 Hb_000778_020 Hb_000083_130--Hb_000778_020 Hb_000413_230 Hb_000413_230 Hb_000083_130--Hb_000413_230 Hb_000189_490 Hb_000189_490 Hb_001103_040--Hb_000189_490 Hb_011382_050 Hb_011382_050 Hb_001103_040--Hb_011382_050 Hb_003442_010 Hb_003442_010 Hb_001103_040--Hb_003442_010 Hb_083493_020 Hb_083493_020 Hb_001103_040--Hb_083493_020 Hb_027506_050 Hb_027506_050 Hb_001103_040--Hb_027506_050 Hb_010270_010--Hb_039342_010 Hb_010270_010--Hb_002781_010 Hb_001675_010 Hb_001675_010 Hb_010270_010--Hb_001675_010 Hb_001799_190 Hb_001799_190 Hb_010270_010--Hb_001799_190 Hb_011716_110 Hb_011716_110 Hb_010270_010--Hb_011716_110 Hb_048848_010 Hb_048848_010 Hb_001091_030--Hb_048848_010 Hb_001817_130 Hb_001817_130 Hb_001091_030--Hb_001817_130 Hb_010398_010 Hb_010398_010 Hb_001091_030--Hb_010398_010 Hb_001091_030--Hb_159411_010 Hb_000362_090 Hb_000362_090 Hb_001091_030--Hb_000362_090 Hb_007380_040 Hb_007380_040 Hb_001091_030--Hb_007380_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.90562 11.1132 2.01605 7.34243 0.597228 1.24178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0291208 9.9741 0.876528

CAGE analysis