Hb_000849_050

Information

Type -
Description -
Location Contig849: 67197-68823
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN79649.1
description hypothetical protein VITISV_010852 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C3W2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010852 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable sodium metabolite cotransporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_050 0.0 - - hypothetical protein VITISV_010852 [Vitis vinifera]
2 Hb_001935_090 0.2015607256 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
3 Hb_025964_040 0.2307675642 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
4 Hb_000242_030 0.2384490711 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
5 Hb_004052_160 0.2499494249 - - Chain A, Rna Binding Protein
6 Hb_006120_080 0.251151734 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
7 Hb_182249_010 0.2529679075 - - -
8 Hb_001357_280 0.2572148466 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
9 Hb_016006_010 0.2596678171 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_002250_050 0.2609725699 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
11 Hb_009372_050 0.2637752197 - - unnamed protein product [Vitis vinifera]
12 Hb_040747_010 0.2648544023 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
13 Hb_004837_050 0.2663580613 - - -
14 Hb_001489_140 0.266724759 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]
15 Hb_102437_010 0.2671656871 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
16 Hb_075230_010 0.268458072 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
17 Hb_003813_080 0.2686892153 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
18 Hb_000003_740 0.2735174804 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
19 Hb_000915_150 0.2741916361 - - -
20 Hb_114674_010 0.2765979209 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_000849_050 Hb_000849_050 Hb_001935_090 Hb_001935_090 Hb_000849_050--Hb_001935_090 Hb_025964_040 Hb_025964_040 Hb_000849_050--Hb_025964_040 Hb_000242_030 Hb_000242_030 Hb_000849_050--Hb_000242_030 Hb_004052_160 Hb_004052_160 Hb_000849_050--Hb_004052_160 Hb_006120_080 Hb_006120_080 Hb_000849_050--Hb_006120_080 Hb_182249_010 Hb_182249_010 Hb_000849_050--Hb_182249_010 Hb_001595_040 Hb_001595_040 Hb_001935_090--Hb_001595_040 Hb_001935_090--Hb_000242_030 Hb_003102_030 Hb_003102_030 Hb_001935_090--Hb_003102_030 Hb_000050_140 Hb_000050_140 Hb_001935_090--Hb_000050_140 Hb_001935_090--Hb_025964_040 Hb_025964_040--Hb_000242_030 Hb_007777_010 Hb_007777_010 Hb_025964_040--Hb_007777_010 Hb_001114_020 Hb_001114_020 Hb_025964_040--Hb_001114_020 Hb_087587_010 Hb_087587_010 Hb_025964_040--Hb_087587_010 Hb_000045_160 Hb_000045_160 Hb_025964_040--Hb_000045_160 Hb_000631_090 Hb_000631_090 Hb_025964_040--Hb_000631_090 Hb_004837_050 Hb_004837_050 Hb_000242_030--Hb_004837_050 Hb_000242_030--Hb_000045_160 Hb_000470_110 Hb_000470_110 Hb_000242_030--Hb_000470_110 Hb_000523_030 Hb_000523_030 Hb_000242_030--Hb_000523_030 Hb_000242_030--Hb_000631_090 Hb_004052_160--Hb_182249_010 Hb_009393_200 Hb_009393_200 Hb_004052_160--Hb_009393_200 Hb_013358_100 Hb_013358_100 Hb_004052_160--Hb_013358_100 Hb_002196_010 Hb_002196_010 Hb_004052_160--Hb_002196_010 Hb_040747_010 Hb_040747_010 Hb_004052_160--Hb_040747_010 Hb_000122_010 Hb_000122_010 Hb_004052_160--Hb_000122_010 Hb_001366_130 Hb_001366_130 Hb_006120_080--Hb_001366_130 Hb_006120_080--Hb_004837_050 Hb_002804_010 Hb_002804_010 Hb_006120_080--Hb_002804_010 Hb_178793_010 Hb_178793_010 Hb_006120_080--Hb_178793_010 Hb_002073_020 Hb_002073_020 Hb_006120_080--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_006120_080--Hb_002874_170 Hb_182249_010--Hb_000122_010 Hb_000179_180 Hb_000179_180 Hb_182249_010--Hb_000179_180 Hb_102437_010 Hb_102437_010 Hb_182249_010--Hb_102437_010 Hb_004570_050 Hb_004570_050 Hb_182249_010--Hb_004570_050 Hb_182249_010--Hb_009393_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12613 2.75778 2.75746 1.95536 0 1.96496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.310075 0 0.530935 0.272949

CAGE analysis