Hb_000050_140

Information

Type -
Description -
Location Contig50: 261346-262918
Sequence    

Annotation

kegg
ID rcu:RCOM_1584940
description hypothetical protein
nr
ID XP_011017049.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
swissprot
ID Q9T068
description EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1
trembl
ID B9R6S9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1584940 PE=4 SV=1
Gene Ontology
ID GO:0010052
description epidermal patterning factor-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_140 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
2 Hb_001935_090 0.2114492786 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
3 Hb_001595_040 0.2628433705 - - Root phototropism protein, putative [Ricinus communis]
4 Hb_002659_130 0.2629051755 - - -
5 Hb_001050_060 0.2630040265 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
6 Hb_000505_070 0.2848511954 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
7 Hb_003102_030 0.2865095176 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
8 Hb_048103_010 0.2910437478 - - -
9 Hb_023051_010 0.2917366442 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
10 Hb_004052_160 0.2942278942 - - Chain A, Rna Binding Protein
11 Hb_054541_010 0.2947198221 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
12 Hb_035436_010 0.2981881666 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
13 Hb_115031_030 0.2992221369 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
14 Hb_000505_050 0.3094164372 - - PREDICTED: heparanase-like protein 3 isoform X2 [Gossypium raimondii]
15 Hb_009372_050 0.3129543789 - - unnamed protein product [Vitis vinifera]
16 Hb_000422_130 0.3137754595 - - hypothetical protein JCGZ_15217 [Jatropha curcas]
17 Hb_004724_470 0.3146314924 - - Nitrilase, putative [Ricinus communis]
18 Hb_004064_030 0.3156301308 - - aldose-1-epimerase, putative [Ricinus communis]
19 Hb_003029_060 0.3204429601 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
20 Hb_007765_070 0.3205759162 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000050_140 Hb_000050_140 Hb_001935_090 Hb_001935_090 Hb_000050_140--Hb_001935_090 Hb_001595_040 Hb_001595_040 Hb_000050_140--Hb_001595_040 Hb_002659_130 Hb_002659_130 Hb_000050_140--Hb_002659_130 Hb_001050_060 Hb_001050_060 Hb_000050_140--Hb_001050_060 Hb_000505_070 Hb_000505_070 Hb_000050_140--Hb_000505_070 Hb_003102_030 Hb_003102_030 Hb_000050_140--Hb_003102_030 Hb_001935_090--Hb_001595_040 Hb_000849_050 Hb_000849_050 Hb_001935_090--Hb_000849_050 Hb_000242_030 Hb_000242_030 Hb_001935_090--Hb_000242_030 Hb_001935_090--Hb_003102_030 Hb_025964_040 Hb_025964_040 Hb_001935_090--Hb_025964_040 Hb_003029_060 Hb_003029_060 Hb_001595_040--Hb_003029_060 Hb_001595_040--Hb_003102_030 Hb_000011_070 Hb_000011_070 Hb_001595_040--Hb_000011_070 Hb_000422_130 Hb_000422_130 Hb_001595_040--Hb_000422_130 Hb_000963_050 Hb_000963_050 Hb_001595_040--Hb_000963_050 Hb_000840_060 Hb_000840_060 Hb_002659_130--Hb_000840_060 Hb_002659_130--Hb_001050_060 Hb_114079_010 Hb_114079_010 Hb_002659_130--Hb_114079_010 Hb_048103_010 Hb_048103_010 Hb_002659_130--Hb_048103_010 Hb_060458_010 Hb_060458_010 Hb_002659_130--Hb_060458_010 Hb_010534_050 Hb_010534_050 Hb_001050_060--Hb_010534_050 Hb_000136_190 Hb_000136_190 Hb_001050_060--Hb_000136_190 Hb_001050_030 Hb_001050_030 Hb_001050_060--Hb_001050_030 Hb_041025_010 Hb_041025_010 Hb_001050_060--Hb_041025_010 Hb_004724_470 Hb_004724_470 Hb_001050_060--Hb_004724_470 Hb_000082_020 Hb_000082_020 Hb_001050_060--Hb_000082_020 Hb_000424_080 Hb_000424_080 Hb_000505_070--Hb_000424_080 Hb_000505_070--Hb_004724_470 Hb_054541_010 Hb_054541_010 Hb_000505_070--Hb_054541_010 Hb_023051_010 Hb_023051_010 Hb_000505_070--Hb_023051_010 Hb_001357_330 Hb_001357_330 Hb_000505_070--Hb_001357_330 Hb_000505_070--Hb_010534_050 Hb_007044_160 Hb_007044_160 Hb_003102_030--Hb_007044_160 Hb_005941_030 Hb_005941_030 Hb_003102_030--Hb_005941_030 Hb_000914_050 Hb_000914_050 Hb_003102_030--Hb_000914_050 Hb_000071_160 Hb_000071_160 Hb_003102_030--Hb_000071_160 Hb_003102_030--Hb_000011_070 Hb_002374_550 Hb_002374_550 Hb_003102_030--Hb_002374_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214309 0.137453 0.213787 0.374029 0 0.374745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.185543

CAGE analysis