Hb_000840_060

Information

Type -
Description -
Location Contig840: 50336-53745
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0009540
description zeaxanthin chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_060 0.0 - - -
2 Hb_002659_130 0.1843171153 - - -
3 Hb_153258_020 0.313262789 - - -
4 Hb_001050_020 0.3167551955 - - -
5 Hb_000566_180 0.3169854076 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
6 Hb_060458_010 0.3341544193 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001050_060 0.3361254219 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
8 Hb_001711_050 0.3406714721 - - -
9 Hb_114079_010 0.3413235477 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
10 Hb_057796_010 0.3451217765 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
11 Hb_001708_010 0.346517738 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
12 Hb_000164_130 0.3473138499 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
13 Hb_005271_230 0.3492430262 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
14 Hb_009541_010 0.3527269641 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
15 Hb_000050_140 0.3537291347 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
16 Hb_003680_040 0.3614475551 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
17 Hb_138462_010 0.3661038586 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
18 Hb_154538_010 0.3682258682 - - -
19 Hb_010998_030 0.3692976506 - - -
20 Hb_001935_090 0.3693706347 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000840_060 Hb_000840_060 Hb_002659_130 Hb_002659_130 Hb_000840_060--Hb_002659_130 Hb_153258_020 Hb_153258_020 Hb_000840_060--Hb_153258_020 Hb_001050_020 Hb_001050_020 Hb_000840_060--Hb_001050_020 Hb_000566_180 Hb_000566_180 Hb_000840_060--Hb_000566_180 Hb_060458_010 Hb_060458_010 Hb_000840_060--Hb_060458_010 Hb_001050_060 Hb_001050_060 Hb_000840_060--Hb_001050_060 Hb_002659_130--Hb_001050_060 Hb_114079_010 Hb_114079_010 Hb_002659_130--Hb_114079_010 Hb_048103_010 Hb_048103_010 Hb_002659_130--Hb_048103_010 Hb_002659_130--Hb_060458_010 Hb_000050_140 Hb_000050_140 Hb_002659_130--Hb_000050_140 Hb_153258_020--Hb_001050_020 Hb_005754_030 Hb_005754_030 Hb_153258_020--Hb_005754_030 Hb_000920_290 Hb_000920_290 Hb_153258_020--Hb_000920_290 Hb_026698_030 Hb_026698_030 Hb_153258_020--Hb_026698_030 Hb_007317_090 Hb_007317_090 Hb_153258_020--Hb_007317_090 Hb_000589_420 Hb_000589_420 Hb_153258_020--Hb_000589_420 Hb_001050_020--Hb_000920_290 Hb_001050_050 Hb_001050_050 Hb_001050_020--Hb_001050_050 Hb_004116_180 Hb_004116_180 Hb_001050_020--Hb_004116_180 Hb_001050_020--Hb_005754_030 Hb_024698_010 Hb_024698_010 Hb_001050_020--Hb_024698_010 Hb_005271_230 Hb_005271_230 Hb_000566_180--Hb_005271_230 Hb_057796_010 Hb_057796_010 Hb_000566_180--Hb_057796_010 Hb_001404_080 Hb_001404_080 Hb_000566_180--Hb_001404_080 Hb_006274_040 Hb_006274_040 Hb_000566_180--Hb_006274_040 Hb_012490_110 Hb_012490_110 Hb_000566_180--Hb_012490_110 Hb_050034_010 Hb_050034_010 Hb_000566_180--Hb_050034_010 Hb_141296_010 Hb_141296_010 Hb_060458_010--Hb_141296_010 Hb_002126_020 Hb_002126_020 Hb_060458_010--Hb_002126_020 Hb_006422_030 Hb_006422_030 Hb_060458_010--Hb_006422_030 Hb_000082_020 Hb_000082_020 Hb_060458_010--Hb_000082_020 Hb_005318_020 Hb_005318_020 Hb_060458_010--Hb_005318_020 Hb_060458_010--Hb_114079_010 Hb_010534_050 Hb_010534_050 Hb_001050_060--Hb_010534_050 Hb_000136_190 Hb_000136_190 Hb_001050_060--Hb_000136_190 Hb_001050_030 Hb_001050_030 Hb_001050_060--Hb_001050_030 Hb_041025_010 Hb_041025_010 Hb_001050_060--Hb_041025_010 Hb_004724_470 Hb_004724_470 Hb_001050_060--Hb_004724_470 Hb_001050_060--Hb_000082_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0767571 0.0645244 0.160701 0 0.180323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0572383 0 0.063687

CAGE analysis