Hb_048103_010

Information

Type -
Description -
Location Contig48103: 586-828
Sequence    

Annotation

kegg
ID rcu:RCOM_0701710
description zinc finger protein, putative
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A067KR52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03975 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048103_010 0.0 - - -
2 Hb_023051_010 0.2158598284 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
3 Hb_000792_080 0.229954868 - - hypothetical protein B456_012G111300, partial [Gossypium raimondii]
4 Hb_002659_130 0.2557868531 - - -
5 Hb_009372_050 0.2557944851 - - unnamed protein product [Vitis vinifera]
6 Hb_000258_360 0.2574535064 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
7 Hb_004052_160 0.2629950019 - - Chain A, Rna Binding Protein
8 Hb_076233_020 0.2635192623 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
9 Hb_169329_010 0.278619308 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
10 Hb_060054_010 0.2823862792 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
11 Hb_134488_010 0.2836876173 - - -
12 Hb_025905_020 0.2860335087 - - major allergen Pru ar 1-like [Jatropha curcas]
13 Hb_000050_140 0.2910437478 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
14 Hb_035436_010 0.2912071394 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
15 Hb_002737_020 0.2929731332 - - metallothionein [Bruguiera gymnorhiza]
16 Hb_106596_010 0.2932317869 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001050_060 0.2941630447 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
18 Hb_177152_010 0.2949714303 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
19 Hb_011139_060 0.2970860611 - - -
20 Hb_068804_080 0.2983121854 - - PREDICTED: protein BRICK 1 [Jatropha curcas]

Gene co-expression network

sample Hb_048103_010 Hb_048103_010 Hb_023051_010 Hb_023051_010 Hb_048103_010--Hb_023051_010 Hb_000792_080 Hb_000792_080 Hb_048103_010--Hb_000792_080 Hb_002659_130 Hb_002659_130 Hb_048103_010--Hb_002659_130 Hb_009372_050 Hb_009372_050 Hb_048103_010--Hb_009372_050 Hb_000258_360 Hb_000258_360 Hb_048103_010--Hb_000258_360 Hb_004052_160 Hb_004052_160 Hb_048103_010--Hb_004052_160 Hb_023051_010--Hb_000792_080 Hb_000377_140 Hb_000377_140 Hb_023051_010--Hb_000377_140 Hb_023051_010--Hb_004052_160 Hb_000982_150 Hb_000982_150 Hb_023051_010--Hb_000982_150 Hb_011781_040 Hb_011781_040 Hb_023051_010--Hb_011781_040 Hb_000792_080--Hb_011781_040 Hb_055339_010 Hb_055339_010 Hb_000792_080--Hb_055339_010 Hb_001673_030 Hb_001673_030 Hb_000792_080--Hb_001673_030 Hb_001032_030 Hb_001032_030 Hb_000792_080--Hb_001032_030 Hb_000840_060 Hb_000840_060 Hb_002659_130--Hb_000840_060 Hb_001050_060 Hb_001050_060 Hb_002659_130--Hb_001050_060 Hb_114079_010 Hb_114079_010 Hb_002659_130--Hb_114079_010 Hb_060458_010 Hb_060458_010 Hb_002659_130--Hb_060458_010 Hb_000050_140 Hb_000050_140 Hb_002659_130--Hb_000050_140 Hb_053073_010 Hb_053073_010 Hb_009372_050--Hb_053073_010 Hb_000242_020 Hb_000242_020 Hb_009372_050--Hb_000242_020 Hb_001208_020 Hb_001208_020 Hb_009372_050--Hb_001208_020 Hb_001935_090 Hb_001935_090 Hb_009372_050--Hb_001935_090 Hb_009372_050--Hb_004052_160 Hb_011139_060 Hb_011139_060 Hb_000258_360--Hb_011139_060 Hb_169329_010 Hb_169329_010 Hb_000258_360--Hb_169329_010 Hb_177152_010 Hb_177152_010 Hb_000258_360--Hb_177152_010 Hb_144550_020 Hb_144550_020 Hb_000258_360--Hb_144550_020 Hb_060054_010 Hb_060054_010 Hb_000258_360--Hb_060054_010 Hb_013358_100 Hb_013358_100 Hb_000258_360--Hb_013358_100 Hb_182249_010 Hb_182249_010 Hb_004052_160--Hb_182249_010 Hb_009393_200 Hb_009393_200 Hb_004052_160--Hb_009393_200 Hb_004052_160--Hb_013358_100 Hb_002196_010 Hb_002196_010 Hb_004052_160--Hb_002196_010 Hb_040747_010 Hb_040747_010 Hb_004052_160--Hb_040747_010 Hb_000122_010 Hb_000122_010 Hb_004052_160--Hb_000122_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60645 5.05039 4.54565 7.47305 0 12.7009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.680471 0 0

CAGE analysis