Hb_009372_050

Information

Type -
Description -
Location Contig9372: 67127-69205
Sequence    

Annotation

kegg
ID sbi:SORBI_05g003110
description SORBIDRAFT_05g003110, Sb05g003110; hypothetical protein
nr
ID CBI22039.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID M8B5K6
description Putative LRR receptor-like serine/threonine-protein kinase OS=Aegilops tauschii GN=F775_23505 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009372_050 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_053073_010 0.2324654555 - - -
3 Hb_000242_020 0.2494578671 - - hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
4 Hb_001208_020 0.2502256799 - - -
5 Hb_001935_090 0.2514155586 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
6 Hb_048103_010 0.2557944851 - - -
7 Hb_004052_160 0.2568987599 - - Chain A, Rna Binding Protein
8 Hb_000808_120 0.2612521865 - - -
9 Hb_000849_050 0.2637752197 - - hypothetical protein VITISV_010852 [Vitis vinifera]
10 Hb_182249_010 0.2642122022 - - -
11 Hb_002965_180 0.2656368254 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
12 Hb_144547_010 0.2710068437 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_009102_020 0.271036765 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
14 Hb_003894_090 0.2749008504 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002343_030 0.2778292708 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000997_010 0.2798203752 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
17 Hb_000377_140 0.2801996954 - - -
18 Hb_023051_010 0.2820067569 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
19 Hb_001459_040 0.284378025 - - Ankyrin repeat-containing protein [Medicago truncatula]
20 Hb_163400_010 0.2869971993 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]

Gene co-expression network

sample Hb_009372_050 Hb_009372_050 Hb_053073_010 Hb_053073_010 Hb_009372_050--Hb_053073_010 Hb_000242_020 Hb_000242_020 Hb_009372_050--Hb_000242_020 Hb_001208_020 Hb_001208_020 Hb_009372_050--Hb_001208_020 Hb_001935_090 Hb_001935_090 Hb_009372_050--Hb_001935_090 Hb_048103_010 Hb_048103_010 Hb_009372_050--Hb_048103_010 Hb_004052_160 Hb_004052_160 Hb_009372_050--Hb_004052_160 Hb_053073_010--Hb_001208_020 Hb_002965_180 Hb_002965_180 Hb_053073_010--Hb_002965_180 Hb_001459_040 Hb_001459_040 Hb_053073_010--Hb_001459_040 Hb_163400_010 Hb_163400_010 Hb_053073_010--Hb_163400_010 Hb_149194_010 Hb_149194_010 Hb_053073_010--Hb_149194_010 Hb_014705_010 Hb_014705_010 Hb_053073_010--Hb_014705_010 Hb_161294_010 Hb_161294_010 Hb_000242_020--Hb_161294_010 Hb_003098_010 Hb_003098_010 Hb_000242_020--Hb_003098_010 Hb_000742_190 Hb_000742_190 Hb_000242_020--Hb_000742_190 Hb_074836_010 Hb_074836_010 Hb_000242_020--Hb_074836_010 Hb_001357_280 Hb_001357_280 Hb_000242_020--Hb_001357_280 Hb_000562_010 Hb_000562_010 Hb_001208_020--Hb_000562_010 Hb_158296_010 Hb_158296_010 Hb_001208_020--Hb_158296_010 Hb_005951_010 Hb_005951_010 Hb_001208_020--Hb_005951_010 Hb_000134_100 Hb_000134_100 Hb_001208_020--Hb_000134_100 Hb_003894_090 Hb_003894_090 Hb_001208_020--Hb_003894_090 Hb_001595_040 Hb_001595_040 Hb_001935_090--Hb_001595_040 Hb_000849_050 Hb_000849_050 Hb_001935_090--Hb_000849_050 Hb_000242_030 Hb_000242_030 Hb_001935_090--Hb_000242_030 Hb_003102_030 Hb_003102_030 Hb_001935_090--Hb_003102_030 Hb_000050_140 Hb_000050_140 Hb_001935_090--Hb_000050_140 Hb_025964_040 Hb_025964_040 Hb_001935_090--Hb_025964_040 Hb_023051_010 Hb_023051_010 Hb_048103_010--Hb_023051_010 Hb_000792_080 Hb_000792_080 Hb_048103_010--Hb_000792_080 Hb_002659_130 Hb_002659_130 Hb_048103_010--Hb_002659_130 Hb_000258_360 Hb_000258_360 Hb_048103_010--Hb_000258_360 Hb_048103_010--Hb_004052_160 Hb_182249_010 Hb_182249_010 Hb_004052_160--Hb_182249_010 Hb_009393_200 Hb_009393_200 Hb_004052_160--Hb_009393_200 Hb_013358_100 Hb_013358_100 Hb_004052_160--Hb_013358_100 Hb_002196_010 Hb_002196_010 Hb_004052_160--Hb_002196_010 Hb_040747_010 Hb_040747_010 Hb_004052_160--Hb_040747_010 Hb_000122_010 Hb_000122_010 Hb_004052_160--Hb_000122_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0095159 0.0188712 0.0289966 0.0353807 0 0.0182242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis