Hb_003894_090

Information

Type -
Description -
Location Contig3894: 64635-67278
Sequence    

Annotation

kegg
ID rcu:RCOM_1612230
description hypothetical protein
nr
ID XP_002511725.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDD6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1612230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_115823_010 0.1286816245 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007904_050 0.2163258841 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
4 Hb_001208_020 0.2206091813 - - -
5 Hb_002217_370 0.2235226239 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105643685 [Jatropha curcas]
6 Hb_022425_020 0.2236899872 - - -
7 Hb_053073_010 0.2275102484 - - -
8 Hb_002942_170 0.2368730089 - - acyl carrier protein, putative [Ricinus communis]
9 Hb_149194_010 0.2424760733 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
10 Hb_002108_020 0.247339479 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
11 Hb_022465_010 0.2513349939 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
12 Hb_000808_120 0.2539896238 - - -
13 Hb_002636_140 0.2560525458 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
14 Hb_023712_020 0.2616559888 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
15 Hb_057721_010 0.2617947173 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_173638_010 0.2621536198 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_006197_010 0.2636801626 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
18 Hb_001329_010 0.2640284827 - - zinc finger protein, putative [Ricinus communis]
19 Hb_002362_010 0.2642235226 - - hypothetical protein JCGZ_12328 [Jatropha curcas]
20 Hb_001366_280 0.2646262097 - - PREDICTED: uncharacterized protein LOC105642732 [Jatropha curcas]

Gene co-expression network

sample Hb_003894_090 Hb_003894_090 Hb_115823_010 Hb_115823_010 Hb_003894_090--Hb_115823_010 Hb_007904_050 Hb_007904_050 Hb_003894_090--Hb_007904_050 Hb_001208_020 Hb_001208_020 Hb_003894_090--Hb_001208_020 Hb_002217_370 Hb_002217_370 Hb_003894_090--Hb_002217_370 Hb_022425_020 Hb_022425_020 Hb_003894_090--Hb_022425_020 Hb_053073_010 Hb_053073_010 Hb_003894_090--Hb_053073_010 Hb_115823_010--Hb_007904_050 Hb_005181_020 Hb_005181_020 Hb_115823_010--Hb_005181_020 Hb_002942_170 Hb_002942_170 Hb_115823_010--Hb_002942_170 Hb_115823_010--Hb_022425_020 Hb_141199_010 Hb_141199_010 Hb_115823_010--Hb_141199_010 Hb_007904_050--Hb_005181_020 Hb_007904_050--Hb_141199_010 Hb_007904_050--Hb_022425_020 Hb_007904_050--Hb_002942_170 Hb_173638_010 Hb_173638_010 Hb_007904_050--Hb_173638_010 Hb_001208_020--Hb_053073_010 Hb_000562_010 Hb_000562_010 Hb_001208_020--Hb_000562_010 Hb_158296_010 Hb_158296_010 Hb_001208_020--Hb_158296_010 Hb_005951_010 Hb_005951_010 Hb_001208_020--Hb_005951_010 Hb_000134_100 Hb_000134_100 Hb_001208_020--Hb_000134_100 Hb_004586_050 Hb_004586_050 Hb_002217_370--Hb_004586_050 Hb_000331_020 Hb_000331_020 Hb_002217_370--Hb_000331_020 Hb_006197_010 Hb_006197_010 Hb_002217_370--Hb_006197_010 Hb_022465_010 Hb_022465_010 Hb_002217_370--Hb_022465_010 Hb_001398_110 Hb_001398_110 Hb_002217_370--Hb_001398_110 Hb_000656_320 Hb_000656_320 Hb_002217_370--Hb_000656_320 Hb_002636_140 Hb_002636_140 Hb_022425_020--Hb_002636_140 Hb_002108_020 Hb_002108_020 Hb_022425_020--Hb_002108_020 Hb_001366_280 Hb_001366_280 Hb_022425_020--Hb_001366_280 Hb_012675_020 Hb_012675_020 Hb_022425_020--Hb_012675_020 Hb_022425_020--Hb_002942_170 Hb_009225_030 Hb_009225_030 Hb_022425_020--Hb_009225_030 Hb_002965_180 Hb_002965_180 Hb_053073_010--Hb_002965_180 Hb_001459_040 Hb_001459_040 Hb_053073_010--Hb_001459_040 Hb_163400_010 Hb_163400_010 Hb_053073_010--Hb_163400_010 Hb_149194_010 Hb_149194_010 Hb_053073_010--Hb_149194_010 Hb_014705_010 Hb_014705_010 Hb_053073_010--Hb_014705_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0293899 0.166426 0.137694 0 0.0456519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis