Hb_002108_020

Information

Type -
Description -
Location Contig2108: 24674-26146
Sequence    

Annotation

kegg
ID rcu:RCOM_1587030
description hypothetical protein
nr
ID KDP41605.1
description hypothetical protein JCGZ_16012 [Jatropha curcas]
swissprot
ID Q9SZG0
description Heptahelical transmembrane protein 4 OS=Arabidopsis thaliana GN=HHP4 PE=2 SV=1
trembl
ID A0A067LAS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16012 PE=4 SV=1
Gene Ontology
ID GO:0016021
description heptahelical transmembrane protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002108_020 0.0 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
2 Hb_000134_100 0.0725170584 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
3 Hb_002636_140 0.081854559 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
4 Hb_012675_020 0.0921375828 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
5 Hb_022425_020 0.1242005091 - - -
6 Hb_001916_010 0.165403211 - - hypothetical protein VITISV_021527 [Vitis vinifera]
7 Hb_004907_040 0.1732558823 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
8 Hb_007904_050 0.2177021719 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
9 Hb_012539_090 0.2228406491 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
10 Hb_001208_020 0.2249076407 - - -
11 Hb_002534_140 0.2367020692 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
12 Hb_173638_010 0.2368841286 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_115823_010 0.2391254894 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005858_010 0.2392523512 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
15 Hb_012758_020 0.2392537168 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_002383_010 0.2393099743 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_000005_150 0.2393340148 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
18 Hb_000245_010 0.2393572554 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
19 Hb_077165_010 0.2393576034 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001414_070 0.2395694496 - - Zinc finger protein GIS2 [Medicago truncatula]

Gene co-expression network

sample Hb_002108_020 Hb_002108_020 Hb_000134_100 Hb_000134_100 Hb_002108_020--Hb_000134_100 Hb_002636_140 Hb_002636_140 Hb_002108_020--Hb_002636_140 Hb_012675_020 Hb_012675_020 Hb_002108_020--Hb_012675_020 Hb_022425_020 Hb_022425_020 Hb_002108_020--Hb_022425_020 Hb_001916_010 Hb_001916_010 Hb_002108_020--Hb_001916_010 Hb_004907_040 Hb_004907_040 Hb_002108_020--Hb_004907_040 Hb_000134_100--Hb_012675_020 Hb_000134_100--Hb_001916_010 Hb_000134_100--Hb_004907_040 Hb_000134_100--Hb_002636_140 Hb_122741_010 Hb_122741_010 Hb_000134_100--Hb_122741_010 Hb_002636_140--Hb_022425_020 Hb_002636_140--Hb_012675_020 Hb_168451_010 Hb_168451_010 Hb_002636_140--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_002636_140--Hb_053224_010 Hb_002534_140 Hb_002534_140 Hb_012675_020--Hb_002534_140 Hb_012675_020--Hb_022425_020 Hb_001689_060 Hb_001689_060 Hb_012675_020--Hb_001689_060 Hb_001366_280 Hb_001366_280 Hb_022425_020--Hb_001366_280 Hb_002942_170 Hb_002942_170 Hb_022425_020--Hb_002942_170 Hb_009225_030 Hb_009225_030 Hb_022425_020--Hb_009225_030 Hb_001916_010--Hb_004907_040 Hb_001916_010--Hb_122741_010 Hb_001916_010--Hb_012675_020 Hb_009803_010 Hb_009803_010 Hb_001916_010--Hb_009803_010 Hb_004907_040--Hb_122741_010 Hb_012539_090 Hb_012539_090 Hb_004907_040--Hb_012539_090 Hb_004907_040--Hb_012675_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0517779 0.0902334 0 0.0175291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis