Hb_012539_090

Information

Type -
Description -
Location Contig12539: 97067-97327
Sequence    

Annotation

kegg
ID egr:104431773
description U-box domain-containing protein 26
nr
ID XP_010042637.1
description PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID M1BLD6
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018564 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012539_090 0.0 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
2 Hb_001832_220 0.1378318006 - - -
3 Hb_003551_040 0.1753227302 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
4 Hb_154381_010 0.1830345201 - - -
5 Hb_002108_020 0.2228406491 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
6 Hb_004907_040 0.22570006 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
7 Hb_000134_100 0.2314813034 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
8 Hb_007904_050 0.2391393886 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
9 Hb_001916_010 0.245907375 - - hypothetical protein VITISV_021527 [Vitis vinifera]
10 Hb_060585_010 0.2545149761 - - unnamed protein product [Coffea canephora]
11 Hb_022425_020 0.2548375503 - - -
12 Hb_002311_460 0.257305872 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_115823_010 0.258753136 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002942_170 0.2594191173 - - acyl carrier protein, putative [Ricinus communis]
15 Hb_002636_140 0.259823974 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
16 Hb_012675_020 0.2748449639 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
17 Hb_001366_280 0.285994102 - - PREDICTED: uncharacterized protein LOC105642732 [Jatropha curcas]
18 Hb_002811_220 0.2924118343 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
19 Hb_173638_010 0.293258988 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_030885_020 0.2954644192 - - -

Gene co-expression network

sample Hb_012539_090 Hb_012539_090 Hb_001832_220 Hb_001832_220 Hb_012539_090--Hb_001832_220 Hb_003551_040 Hb_003551_040 Hb_012539_090--Hb_003551_040 Hb_154381_010 Hb_154381_010 Hb_012539_090--Hb_154381_010 Hb_002108_020 Hb_002108_020 Hb_012539_090--Hb_002108_020 Hb_004907_040 Hb_004907_040 Hb_012539_090--Hb_004907_040 Hb_000134_100 Hb_000134_100 Hb_012539_090--Hb_000134_100 Hb_001832_220--Hb_003551_040 Hb_001832_220--Hb_154381_010 Hb_002311_460 Hb_002311_460 Hb_001832_220--Hb_002311_460 Hb_000737_020 Hb_000737_020 Hb_001832_220--Hb_000737_020 Hb_011609_200 Hb_011609_200 Hb_001832_220--Hb_011609_200 Hb_003551_040--Hb_154381_010 Hb_003551_040--Hb_002311_460 Hb_030885_020 Hb_030885_020 Hb_003551_040--Hb_030885_020 Hb_003551_040--Hb_000737_020 Hb_154381_010--Hb_002311_460 Hb_154381_010--Hb_030885_020 Hb_154381_010--Hb_000737_020 Hb_002108_020--Hb_000134_100 Hb_002636_140 Hb_002636_140 Hb_002108_020--Hb_002636_140 Hb_012675_020 Hb_012675_020 Hb_002108_020--Hb_012675_020 Hb_022425_020 Hb_022425_020 Hb_002108_020--Hb_022425_020 Hb_001916_010 Hb_001916_010 Hb_002108_020--Hb_001916_010 Hb_002108_020--Hb_004907_040 Hb_004907_040--Hb_001916_010 Hb_122741_010 Hb_122741_010 Hb_004907_040--Hb_122741_010 Hb_004907_040--Hb_000134_100 Hb_004907_040--Hb_012675_020 Hb_000134_100--Hb_012675_020 Hb_000134_100--Hb_001916_010 Hb_000134_100--Hb_002636_140 Hb_000134_100--Hb_122741_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.885352 1.16292 0 0.475728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.203221 0

CAGE analysis