Hb_012675_020

Information

Type -
Description -
Location Contig12675: 24218-24672
Sequence    

Annotation

kegg
ID cmo:103489985
description GDSL esterase/lipase APG-like
nr
ID KDO38518.1
description hypothetical protein CISIN_1g018227mg [Citrus sinensis]
swissprot
ID O23469
description GDSL esterase/lipase At4g16220 OS=Arabidopsis thaliana GN=At4g16220 PE=3 SV=2
trembl
ID K7KPP2
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g33370-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08073: 24155-25692 , PASA_asmbl_08074: 24155-25123
cDNA
(Sanger)
(ID:Location)		 009_H10.ab1: 24155-25692 , 029_H04.ab1: 24155-25317 , 036_A15.ab1: 24155-25123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012675_020 0.0 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
2 Hb_002108_020 0.0921375828 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
3 Hb_002636_140 0.0949340717 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
4 Hb_000134_100 0.1002261646 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
5 Hb_002534_140 0.1600005607 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
6 Hb_022425_020 0.1754064238 - - -
7 Hb_001689_060 0.1878427088 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
8 Hb_000733_140 0.1878458523 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
9 Hb_002918_100 0.1879026771 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
10 Hb_001343_070 0.1879035707 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
11 Hb_000032_110 0.1879057199 - - nadhp hc toxin reductase, putative [Ricinus communis]
12 Hb_002909_030 0.1879082862 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
13 Hb_023930_010 0.1879623274 - - hypothetical protein RCOM_0641040 [Ricinus communis]
14 Hb_184500_020 0.1879996983 - - -
15 Hb_053709_020 0.1880038399 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_001545_090 0.188086633 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
17 Hb_000039_130 0.1880938914 - - -
18 Hb_000494_140 0.1882132189 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
19 Hb_000125_050 0.1883156864 - - -
20 Hb_000235_020 0.1883255104 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012675_020 Hb_012675_020 Hb_002108_020 Hb_002108_020 Hb_012675_020--Hb_002108_020 Hb_002636_140 Hb_002636_140 Hb_012675_020--Hb_002636_140 Hb_000134_100 Hb_000134_100 Hb_012675_020--Hb_000134_100 Hb_002534_140 Hb_002534_140 Hb_012675_020--Hb_002534_140 Hb_022425_020 Hb_022425_020 Hb_012675_020--Hb_022425_020 Hb_001689_060 Hb_001689_060 Hb_012675_020--Hb_001689_060 Hb_002108_020--Hb_000134_100 Hb_002108_020--Hb_002636_140 Hb_002108_020--Hb_022425_020 Hb_001916_010 Hb_001916_010 Hb_002108_020--Hb_001916_010 Hb_004907_040 Hb_004907_040 Hb_002108_020--Hb_004907_040 Hb_002636_140--Hb_022425_020 Hb_002636_140--Hb_000134_100 Hb_168451_010 Hb_168451_010 Hb_002636_140--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_002636_140--Hb_053224_010 Hb_000134_100--Hb_001916_010 Hb_000134_100--Hb_004907_040 Hb_122741_010 Hb_122741_010 Hb_000134_100--Hb_122741_010 Hb_061335_010 Hb_061335_010 Hb_002534_140--Hb_061335_010 Hb_008895_010 Hb_008895_010 Hb_002534_140--Hb_008895_010 Hb_004324_180 Hb_004324_180 Hb_002534_140--Hb_004324_180 Hb_176760_010 Hb_176760_010 Hb_002534_140--Hb_176760_010 Hb_039046_010 Hb_039046_010 Hb_002534_140--Hb_039046_010 Hb_009615_140 Hb_009615_140 Hb_002534_140--Hb_009615_140 Hb_001366_280 Hb_001366_280 Hb_022425_020--Hb_001366_280 Hb_002942_170 Hb_002942_170 Hb_022425_020--Hb_002942_170 Hb_009225_030 Hb_009225_030 Hb_022425_020--Hb_009225_030 Hb_000733_140 Hb_000733_140 Hb_001689_060--Hb_000733_140 Hb_002918_100 Hb_002918_100 Hb_001689_060--Hb_002918_100 Hb_000032_110 Hb_000032_110 Hb_001689_060--Hb_000032_110 Hb_001343_070 Hb_001343_070 Hb_001689_060--Hb_001343_070 Hb_023930_010 Hb_023930_010 Hb_001689_060--Hb_023930_010 Hb_002909_030 Hb_002909_030 Hb_001689_060--Hb_002909_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.26211 3.16195 0 0.326862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis