Hb_173638_010

Information

Type -
Description -
Location Contig173638: 25-1203
Sequence    

Annotation

kegg
ID pmum:103343741
description putative disease resistance protein RGA1
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173638_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_007413_020 0.077237368 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000362_140 0.1707321867 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
4 Hb_002942_170 0.185664066 - - acyl carrier protein, putative [Ricinus communis]
5 Hb_022425_020 0.1921373276 - - -
6 Hb_007904_050 0.1989239607 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
7 Hb_002811_220 0.2288793041 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
8 Hb_115823_010 0.2295769133 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002636_140 0.2347565747 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
10 Hb_002108_020 0.2368841286 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
11 Hb_000105_110 0.2408622844 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
12 Hb_001366_280 0.2582609962 - - PREDICTED: uncharacterized protein LOC105642732 [Jatropha curcas]
13 Hb_007617_040 0.2596318954 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
14 Hb_115832_010 0.260963391 - - transcription factor, putative [Ricinus communis]
15 Hb_002851_040 0.2615294316 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
16 Hb_003894_090 0.2621536198 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001329_010 0.2651671696 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000107_670 0.2688264844 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
19 Hb_000134_100 0.2832869868 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
20 Hb_005181_020 0.2849980574 - - Pectinesterase-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_173638_010 Hb_173638_010 Hb_007413_020 Hb_007413_020 Hb_173638_010--Hb_007413_020 Hb_000362_140 Hb_000362_140 Hb_173638_010--Hb_000362_140 Hb_002942_170 Hb_002942_170 Hb_173638_010--Hb_002942_170 Hb_022425_020 Hb_022425_020 Hb_173638_010--Hb_022425_020 Hb_007904_050 Hb_007904_050 Hb_173638_010--Hb_007904_050 Hb_002811_220 Hb_002811_220 Hb_173638_010--Hb_002811_220 Hb_007413_020--Hb_000362_140 Hb_007413_020--Hb_002942_170 Hb_002851_040 Hb_002851_040 Hb_007413_020--Hb_002851_040 Hb_115832_010 Hb_115832_010 Hb_007413_020--Hb_115832_010 Hb_000105_110 Hb_000105_110 Hb_007413_020--Hb_000105_110 Hb_007120_020 Hb_007120_020 Hb_000362_140--Hb_007120_020 Hb_000763_030 Hb_000763_030 Hb_000362_140--Hb_000763_030 Hb_001123_180 Hb_001123_180 Hb_000362_140--Hb_001123_180 Hb_137288_010 Hb_137288_010 Hb_000362_140--Hb_137288_010 Hb_001329_010 Hb_001329_010 Hb_002942_170--Hb_001329_010 Hb_002942_170--Hb_002811_220 Hb_002942_170--Hb_022425_020 Hb_002942_170--Hb_007904_050 Hb_001366_280 Hb_001366_280 Hb_002942_170--Hb_001366_280 Hb_002636_140 Hb_002636_140 Hb_022425_020--Hb_002636_140 Hb_002108_020 Hb_002108_020 Hb_022425_020--Hb_002108_020 Hb_022425_020--Hb_001366_280 Hb_012675_020 Hb_012675_020 Hb_022425_020--Hb_012675_020 Hb_009225_030 Hb_009225_030 Hb_022425_020--Hb_009225_030 Hb_115823_010 Hb_115823_010 Hb_007904_050--Hb_115823_010 Hb_005181_020 Hb_005181_020 Hb_007904_050--Hb_005181_020 Hb_141199_010 Hb_141199_010 Hb_007904_050--Hb_141199_010 Hb_007904_050--Hb_022425_020 Hb_000002_430 Hb_000002_430 Hb_002811_220--Hb_000002_430 Hb_000416_080 Hb_000416_080 Hb_002811_220--Hb_000416_080 Hb_003750_090 Hb_003750_090 Hb_002811_220--Hb_003750_090 Hb_000120_630 Hb_000120_630 Hb_002811_220--Hb_000120_630 Hb_059567_010 Hb_059567_010 Hb_002811_220--Hb_059567_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0182488 0 0.152966 0.115067 0 0.0320826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis