Hb_000242_020

Information

Type -
Description -
Location Contig242: 29638-30758
Sequence    

Annotation

kegg
ID cic:CICLE_v100246891m
description hypothetical protein
nr
ID XP_006427400.1
description hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SP57
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100246891mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000242_020 0.0 - - hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
2 Hb_009372_050 0.2494578671 - - unnamed protein product [Vitis vinifera]
3 Hb_161294_010 0.252484317 - - PREDICTED: serine/threonine-protein kinase ppk15 isoform X2 [Jatropha curcas]
4 Hb_003098_010 0.258946096 - - -
5 Hb_000742_190 0.2598434086 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_074836_010 0.2612991719 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001357_280 0.2670690392 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
8 Hb_089140_120 0.2682129685 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
9 Hb_004112_060 0.269538429 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
10 Hb_127404_010 0.2718294493 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
11 Hb_009102_020 0.2736869152 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
12 Hb_071781_010 0.2765016357 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
13 Hb_001269_090 0.2766461152 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
14 Hb_053345_010 0.2805253 - - -
15 Hb_040747_010 0.2821716357 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
16 Hb_000438_150 0.2828779137 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
17 Hb_004052_160 0.2836590758 - - Chain A, Rna Binding Protein
18 Hb_025595_010 0.2837637129 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
19 Hb_161994_040 0.2841350099 - - -
20 Hb_000731_230 0.2846503131 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000242_020 Hb_000242_020 Hb_009372_050 Hb_009372_050 Hb_000242_020--Hb_009372_050 Hb_161294_010 Hb_161294_010 Hb_000242_020--Hb_161294_010 Hb_003098_010 Hb_003098_010 Hb_000242_020--Hb_003098_010 Hb_000742_190 Hb_000742_190 Hb_000242_020--Hb_000742_190 Hb_074836_010 Hb_074836_010 Hb_000242_020--Hb_074836_010 Hb_001357_280 Hb_001357_280 Hb_000242_020--Hb_001357_280 Hb_053073_010 Hb_053073_010 Hb_009372_050--Hb_053073_010 Hb_001208_020 Hb_001208_020 Hb_009372_050--Hb_001208_020 Hb_001935_090 Hb_001935_090 Hb_009372_050--Hb_001935_090 Hb_048103_010 Hb_048103_010 Hb_009372_050--Hb_048103_010 Hb_004052_160 Hb_004052_160 Hb_009372_050--Hb_004052_160 Hb_054541_010 Hb_054541_010 Hb_161294_010--Hb_054541_010 Hb_035436_010 Hb_035436_010 Hb_161294_010--Hb_035436_010 Hb_169505_010 Hb_169505_010 Hb_161294_010--Hb_169505_010 Hb_161294_010--Hb_000742_190 Hb_000311_030 Hb_000311_030 Hb_161294_010--Hb_000311_030 Hb_002818_050 Hb_002818_050 Hb_161294_010--Hb_002818_050 Hb_000035_280 Hb_000035_280 Hb_003098_010--Hb_000035_280 Hb_001449_060 Hb_001449_060 Hb_003098_010--Hb_001449_060 Hb_003098_010--Hb_000311_030 Hb_006642_030 Hb_006642_030 Hb_003098_010--Hb_006642_030 Hb_113084_010 Hb_113084_010 Hb_003098_010--Hb_113084_010 Hb_071781_010 Hb_071781_010 Hb_000742_190--Hb_071781_010 Hb_010488_040 Hb_010488_040 Hb_000742_190--Hb_010488_040 Hb_008119_030 Hb_008119_030 Hb_000742_190--Hb_008119_030 Hb_003605_040 Hb_003605_040 Hb_000742_190--Hb_003605_040 Hb_000742_190--Hb_002818_050 Hb_002498_240 Hb_002498_240 Hb_000742_190--Hb_002498_240 Hb_000926_230 Hb_000926_230 Hb_074836_010--Hb_000926_230 Hb_009620_090 Hb_009620_090 Hb_074836_010--Hb_009620_090 Hb_155541_010 Hb_155541_010 Hb_074836_010--Hb_155541_010 Hb_164255_010 Hb_164255_010 Hb_074836_010--Hb_164255_010 Hb_001545_050 Hb_001545_050 Hb_074836_010--Hb_001545_050 Hb_118228_010 Hb_118228_010 Hb_074836_010--Hb_118228_010 Hb_000532_150 Hb_000532_150 Hb_001357_280--Hb_000532_150 Hb_017159_010 Hb_017159_010 Hb_001357_280--Hb_017159_010 Hb_000594_110 Hb_000594_110 Hb_001357_280--Hb_000594_110 Hb_000732_240 Hb_000732_240 Hb_001357_280--Hb_000732_240 Hb_000284_170 Hb_000284_170 Hb_001357_280--Hb_000284_170 Hb_002250_050 Hb_002250_050 Hb_001357_280--Hb_002250_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24835 1.6376 1.65014 3.67131 0 1.16362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.326214 0.641119 0 0 0

CAGE analysis