Hb_161294_010

Information

Type -
Description -
Location Contig161294: 329-499
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06890g
description POPTRDRAFT_820414; kinase family protein
nr
ID XP_012087353.1
description PREDICTED: serine/threonine-protein kinase ppk15 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HHQ2
description Kinase family protein OS=Populus trichocarpa GN=POPTR_0008s06890g PE=4 SV=2
Gene Ontology
ID GO:0005737
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161294_010 0.0 - - PREDICTED: serine/threonine-protein kinase ppk15 isoform X2 [Jatropha curcas]
2 Hb_054541_010 0.2154368581 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_035436_010 0.2217098052 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
4 Hb_169505_010 0.2262840519 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
5 Hb_000742_190 0.2351066878 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000311_030 0.2393930045 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
7 Hb_002818_050 0.2429936927 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_013358_100 0.2479457718 - - unknown [Medicago truncatula]
9 Hb_177152_010 0.2488496734 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
10 Hb_000242_020 0.252484317 - - hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
11 Hb_133724_010 0.2606239594 - - conserved hypothetical protein [Ricinus communis]
12 Hb_071781_010 0.2615546071 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
13 Hb_006405_030 0.2622958349 - - hypothetical protein VITISV_043238 [Vitis vinifera]
14 Hb_000139_490 0.2627914109 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
15 Hb_007441_090 0.2636250005 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
16 Hb_000029_100 0.2637806721 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
17 Hb_073799_010 0.2639253168 - - conserved hypothetical protein [Ricinus communis]
18 Hb_178620_010 0.2653743885 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
19 Hb_040747_010 0.2656000795 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
20 Hb_011287_040 0.2660176208 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_161294_010 Hb_161294_010 Hb_054541_010 Hb_054541_010 Hb_161294_010--Hb_054541_010 Hb_035436_010 Hb_035436_010 Hb_161294_010--Hb_035436_010 Hb_169505_010 Hb_169505_010 Hb_161294_010--Hb_169505_010 Hb_000742_190 Hb_000742_190 Hb_161294_010--Hb_000742_190 Hb_000311_030 Hb_000311_030 Hb_161294_010--Hb_000311_030 Hb_002818_050 Hb_002818_050 Hb_161294_010--Hb_002818_050 Hb_054541_010--Hb_035436_010 Hb_177152_010 Hb_177152_010 Hb_054541_010--Hb_177152_010 Hb_013358_100 Hb_013358_100 Hb_054541_010--Hb_013358_100 Hb_000422_130 Hb_000422_130 Hb_054541_010--Hb_000422_130 Hb_004525_080 Hb_004525_080 Hb_054541_010--Hb_004525_080 Hb_068569_010 Hb_068569_010 Hb_054541_010--Hb_068569_010 Hb_035436_010--Hb_013358_100 Hb_010964_020 Hb_010964_020 Hb_035436_010--Hb_010964_020 Hb_035436_010--Hb_177152_010 Hb_178620_010 Hb_178620_010 Hb_035436_010--Hb_178620_010 Hb_025905_020 Hb_025905_020 Hb_035436_010--Hb_025905_020 Hb_041025_010 Hb_041025_010 Hb_169505_010--Hb_041025_010 Hb_169505_010--Hb_035436_010 Hb_169505_010--Hb_178620_010 Hb_040747_010 Hb_040747_010 Hb_169505_010--Hb_040747_010 Hb_001518_070 Hb_001518_070 Hb_169505_010--Hb_001518_070 Hb_133724_010 Hb_133724_010 Hb_169505_010--Hb_133724_010 Hb_071781_010 Hb_071781_010 Hb_000742_190--Hb_071781_010 Hb_010488_040 Hb_010488_040 Hb_000742_190--Hb_010488_040 Hb_008119_030 Hb_008119_030 Hb_000742_190--Hb_008119_030 Hb_003605_040 Hb_003605_040 Hb_000742_190--Hb_003605_040 Hb_000742_190--Hb_002818_050 Hb_002498_240 Hb_002498_240 Hb_000742_190--Hb_002498_240 Hb_161994_040 Hb_161994_040 Hb_000311_030--Hb_161994_040 Hb_006642_030 Hb_006642_030 Hb_000311_030--Hb_006642_030 Hb_008054_050 Hb_008054_050 Hb_000311_030--Hb_008054_050 Hb_065841_010 Hb_065841_010 Hb_000311_030--Hb_065841_010 Hb_000311_030--Hb_068569_010 Hb_000311_030--Hb_013358_100 Hb_010942_020 Hb_010942_020 Hb_002818_050--Hb_010942_020 Hb_002541_020 Hb_002541_020 Hb_002818_050--Hb_002541_020 Hb_084513_010 Hb_084513_010 Hb_002818_050--Hb_084513_010 Hb_001519_040 Hb_001519_040 Hb_002818_050--Hb_001519_040 Hb_002818_050--Hb_003605_040 Hb_001268_340 Hb_001268_340 Hb_002818_050--Hb_001268_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1008 17.7138 35.0743 110.03 0 47.8827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0248 5.70322 0 9.65523 2.79136

CAGE analysis