Hb_161994_040

Information

Type -
Description -
Location Contig161994: 28567-31553
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14564: 28685-28796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161994_040 0.0 - - -
2 Hb_000311_030 0.1338533478 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
3 Hb_008054_050 0.1493862969 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
4 Hb_065841_010 0.1753560497 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
5 Hb_013358_100 0.175663597 - - unknown [Medicago truncatula]
6 Hb_145317_010 0.1875945409 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
7 Hb_006642_030 0.1888412207 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
8 Hb_177152_010 0.1972130241 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
9 Hb_040747_010 0.1996094048 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
10 Hb_001493_080 0.2093815599 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
11 Hb_003835_090 0.2172577342 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
12 Hb_009393_200 0.2177221777 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
13 Hb_003910_010 0.2191801169 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
14 Hb_005539_310 0.2193354117 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
15 Hb_106688_010 0.2195928358 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
16 Hb_068569_010 0.2197664108 - - -
17 Hb_089140_120 0.2205005965 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
18 Hb_007157_060 0.2217630803 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
19 Hb_000438_150 0.2253555752 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
20 Hb_000181_290 0.2260297088 - - hypothetical protein POPTR_0001s41000g [Populus trichocarpa]

Gene co-expression network

sample Hb_161994_040 Hb_161994_040 Hb_000311_030 Hb_000311_030 Hb_161994_040--Hb_000311_030 Hb_008054_050 Hb_008054_050 Hb_161994_040--Hb_008054_050 Hb_065841_010 Hb_065841_010 Hb_161994_040--Hb_065841_010 Hb_013358_100 Hb_013358_100 Hb_161994_040--Hb_013358_100 Hb_145317_010 Hb_145317_010 Hb_161994_040--Hb_145317_010 Hb_006642_030 Hb_006642_030 Hb_161994_040--Hb_006642_030 Hb_000311_030--Hb_006642_030 Hb_000311_030--Hb_008054_050 Hb_000311_030--Hb_065841_010 Hb_068569_010 Hb_068569_010 Hb_000311_030--Hb_068569_010 Hb_000311_030--Hb_013358_100 Hb_008054_050--Hb_145317_010 Hb_004374_130 Hb_004374_130 Hb_008054_050--Hb_004374_130 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040 Hb_007157_060 Hb_007157_060 Hb_065841_010--Hb_007157_060 Hb_065841_010--Hb_013358_100 Hb_065841_010--Hb_008054_050 Hb_065841_010--Hb_068569_010 Hb_177152_010 Hb_177152_010 Hb_065841_010--Hb_177152_010 Hb_013358_100--Hb_177152_010 Hb_013358_100--Hb_068569_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_000703_110 Hb_000703_110 Hb_006642_030--Hb_000703_110 Hb_000311_040 Hb_000311_040 Hb_006642_030--Hb_000311_040 Hb_006642_030--Hb_008054_050 Hb_002344_130 Hb_002344_130 Hb_006642_030--Hb_002344_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.71974 0.793192 0.432715 1.92534 0.321045 0.652236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259887 0.102089 0.173643 0.169455 0

CAGE analysis