Hb_010942_020

Information

Type -
Description -
Location Contig10942: 8073-14710
Sequence    

Annotation

kegg
ID rcu:RCOM_0668180
description hypothetical protein
nr
ID XP_002526381.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LUZ6
description Protein PMR5 OS=Arabidopsis thaliana GN=PMR5 PE=2 SV=1
trembl
ID B9SK62
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0668180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02848: 7949-14357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010942_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002818_050 0.1110864348 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_002804_020 0.15027163 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
4 Hb_074449_010 0.1541670618 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_004032_160 0.1547096893 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
6 Hb_002541_020 0.1638011048 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
7 Hb_001519_040 0.1642687302 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
8 Hb_084513_010 0.1704715649 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
9 Hb_000270_870 0.1838045945 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
10 Hb_001268_340 0.1891543741 - - Actin, putative [Ricinus communis]
11 Hb_161478_010 0.1907714051 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_004800_150 0.19879395 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
13 Hb_000413_070 0.19983969 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000120_550 0.2032341113 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
15 Hb_000070_030 0.2047818264 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
16 Hb_010883_140 0.2048693257 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
17 Hb_001357_330 0.2050868493 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
18 Hb_001776_030 0.2056596152 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003605_040 0.2134908375 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
20 Hb_004611_030 0.2150098151 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]

Gene co-expression network

sample Hb_010942_020 Hb_010942_020 Hb_002818_050 Hb_002818_050 Hb_010942_020--Hb_002818_050 Hb_002804_020 Hb_002804_020 Hb_010942_020--Hb_002804_020 Hb_074449_010 Hb_074449_010 Hb_010942_020--Hb_074449_010 Hb_004032_160 Hb_004032_160 Hb_010942_020--Hb_004032_160 Hb_002541_020 Hb_002541_020 Hb_010942_020--Hb_002541_020 Hb_001519_040 Hb_001519_040 Hb_010942_020--Hb_001519_040 Hb_002818_050--Hb_002541_020 Hb_084513_010 Hb_084513_010 Hb_002818_050--Hb_084513_010 Hb_002818_050--Hb_001519_040 Hb_003605_040 Hb_003605_040 Hb_002818_050--Hb_003605_040 Hb_001268_340 Hb_001268_340 Hb_002818_050--Hb_001268_340 Hb_000733_050 Hb_000733_050 Hb_002804_020--Hb_000733_050 Hb_002804_020--Hb_002541_020 Hb_029866_100 Hb_029866_100 Hb_002804_020--Hb_029866_100 Hb_000270_870 Hb_000270_870 Hb_002804_020--Hb_000270_870 Hb_002804_020--Hb_074449_010 Hb_000413_070 Hb_000413_070 Hb_002804_020--Hb_000413_070 Hb_001488_340 Hb_001488_340 Hb_074449_010--Hb_001488_340 Hb_161478_010 Hb_161478_010 Hb_074449_010--Hb_161478_010 Hb_010883_140 Hb_010883_140 Hb_074449_010--Hb_010883_140 Hb_074449_010--Hb_002541_020 Hb_074449_010--Hb_000270_870 Hb_005784_070 Hb_005784_070 Hb_004032_160--Hb_005784_070 Hb_004032_160--Hb_001268_340 Hb_004032_160--Hb_001519_040 Hb_001195_640 Hb_001195_640 Hb_004032_160--Hb_001195_640 Hb_000030_160 Hb_000030_160 Hb_004032_160--Hb_000030_160 Hb_001053_190 Hb_001053_190 Hb_004032_160--Hb_001053_190 Hb_002541_020--Hb_000413_070 Hb_000120_550 Hb_000120_550 Hb_002541_020--Hb_000120_550 Hb_165279_010 Hb_165279_010 Hb_002541_020--Hb_165279_010 Hb_006588_160 Hb_006588_160 Hb_001519_040--Hb_006588_160 Hb_026234_010 Hb_026234_010 Hb_001519_040--Hb_026234_010 Hb_000154_050 Hb_000154_050 Hb_001519_040--Hb_000154_050 Hb_016448_010 Hb_016448_010 Hb_001519_040--Hb_016448_010 Hb_000098_240 Hb_000098_240 Hb_001519_040--Hb_000098_240 Hb_001824_030 Hb_001824_030 Hb_001519_040--Hb_001824_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0756 3.36944 14.2085 14.795 1.35371 7.93239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.22163 1.35002 0.60649 6.76409 4.7742

CAGE analysis