Hb_000035_280

Information

Type -
Description -
Location Contig35: 314167-314412
Sequence    

Annotation

kegg
ID rcu:RCOM_0920790
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012076408.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
swissprot
ID Q9LTV8
description Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
trembl
ID A0A067KBJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07073 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36427: 314141-314494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_280 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
2 Hb_003098_010 0.1967548564 - - -
3 Hb_113084_010 0.2747683546 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_118228_010 0.3150044263 - - PREDICTED: pirin-like protein [Jatropha curcas]
5 Hb_000045_280 0.3163461079 - - hypothetical protein JCGZ_04076 [Jatropha curcas]
6 Hb_002893_120 0.3238627361 - - PREDICTED: uncharacterized protein LOC105637692 [Jatropha curcas]
7 Hb_004785_050 0.3248283365 - - PREDICTED: serine decarboxylase [Jatropha curcas]
8 Hb_001449_060 0.3249343744 - - kelch repeat protein, putative [Ricinus communis]
9 Hb_000108_060 0.3358315614 - - hypothetical protein POPTR_0010s07820g [Populus trichocarpa]
10 Hb_128473_010 0.3424300389 - - -
11 Hb_056559_010 0.3448236914 - - PREDICTED: uncharacterized protein LOC104088595 [Nicotiana tomentosiformis]
12 Hb_019762_040 0.3457567867 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001842_030 0.3489227609 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
14 Hb_011485_090 0.3492242251 - - -
15 Hb_000242_020 0.3500496841 - - hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
16 Hb_074836_010 0.3508122907 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003197_070 0.3549343699 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
18 Hb_155541_010 0.3552874564 - - -
19 Hb_100105_010 0.3561095654 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
20 Hb_005273_020 0.3562377498 - - -

Gene co-expression network

sample Hb_000035_280 Hb_000035_280 Hb_003098_010 Hb_003098_010 Hb_000035_280--Hb_003098_010 Hb_113084_010 Hb_113084_010 Hb_000035_280--Hb_113084_010 Hb_118228_010 Hb_118228_010 Hb_000035_280--Hb_118228_010 Hb_000045_280 Hb_000045_280 Hb_000035_280--Hb_000045_280 Hb_002893_120 Hb_002893_120 Hb_000035_280--Hb_002893_120 Hb_004785_050 Hb_004785_050 Hb_000035_280--Hb_004785_050 Hb_001449_060 Hb_001449_060 Hb_003098_010--Hb_001449_060 Hb_000242_020 Hb_000242_020 Hb_003098_010--Hb_000242_020 Hb_000311_030 Hb_000311_030 Hb_003098_010--Hb_000311_030 Hb_006642_030 Hb_006642_030 Hb_003098_010--Hb_006642_030 Hb_003098_010--Hb_113084_010 Hb_000122_120 Hb_000122_120 Hb_113084_010--Hb_000122_120 Hb_000668_090 Hb_000668_090 Hb_113084_010--Hb_000668_090 Hb_033546_020 Hb_033546_020 Hb_113084_010--Hb_033546_020 Hb_001001_050 Hb_001001_050 Hb_113084_010--Hb_001001_050 Hb_155541_010 Hb_155541_010 Hb_118228_010--Hb_155541_010 Hb_011485_090 Hb_011485_090 Hb_118228_010--Hb_011485_090 Hb_001828_100 Hb_001828_100 Hb_118228_010--Hb_001828_100 Hb_074836_010 Hb_074836_010 Hb_118228_010--Hb_074836_010 Hb_010913_010 Hb_010913_010 Hb_118228_010--Hb_010913_010 Hb_000261_170 Hb_000261_170 Hb_118228_010--Hb_000261_170 Hb_003902_060 Hb_003902_060 Hb_000045_280--Hb_003902_060 Hb_089140_010 Hb_089140_010 Hb_000045_280--Hb_089140_010 Hb_000731_230 Hb_000731_230 Hb_000045_280--Hb_000731_230 Hb_006907_100 Hb_006907_100 Hb_000045_280--Hb_006907_100 Hb_001269_290 Hb_001269_290 Hb_000045_280--Hb_001269_290 Hb_158384_010 Hb_158384_010 Hb_000045_280--Hb_158384_010 Hb_000207_380 Hb_000207_380 Hb_002893_120--Hb_000207_380 Hb_032208_070 Hb_032208_070 Hb_002893_120--Hb_032208_070 Hb_014783_010 Hb_014783_010 Hb_002893_120--Hb_014783_010 Hb_000224_200 Hb_000224_200 Hb_002893_120--Hb_000224_200 Hb_164926_020 Hb_164926_020 Hb_002893_120--Hb_164926_020 Hb_003371_180 Hb_003371_180 Hb_002893_120--Hb_003371_180 Hb_004308_020 Hb_004308_020 Hb_004785_050--Hb_004308_020 Hb_128473_010 Hb_128473_010 Hb_004785_050--Hb_128473_010 Hb_004785_050--Hb_000261_170 Hb_159327_010 Hb_159327_010 Hb_004785_050--Hb_159327_010 Hb_007210_020 Hb_007210_020 Hb_004785_050--Hb_007210_020 Hb_003813_010 Hb_003813_010 Hb_004785_050--Hb_003813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.98166 0.395181 0.645528 3.18106 0 0.305915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.65946 2.09503 0 0 0

CAGE analysis