Hb_033546_020

Information

Type -
Description -
Location Contig33546: 15124-22727
Sequence    

Annotation

kegg
ID rcu:RCOM_1168720
description xenotropic and polytropic murine leukemia virus receptor pho1, putative
nr
ID XP_002528822.1
description xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
swissprot
ID Q8S403
description Phosphate transporter PHO1 OS=Arabidopsis thaliana GN=PHO1 PE=2 SV=1
trembl
ID B9SS53
description Xenotropic and polytropic murine leukemia virus receptor pho1, putative OS=Ricinus communis GN=RCOM_1168720 PE=4 SV=1
Gene Ontology
ID GO:0005802
description phosphate transporter pho1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35115: 18819-20524 , PASA_asmbl_35116: 21350-22020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033546_020 0.0 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
2 Hb_001377_300 0.2612043259 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
3 Hb_001998_170 0.2704226948 - - BnaC07g08230D [Brassica napus]
4 Hb_113084_010 0.2712209159 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_003906_020 0.281668932 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
6 Hb_007889_020 0.2818185855 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000311_040 0.2873200261 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
8 Hb_000668_090 0.2873211745 - - senescence-associated family protein [Populus trichocarpa]
9 Hb_000032_050 0.2954691099 - - hypothetical protein RCOM_1691130 [Ricinus communis]
10 Hb_000895_080 0.2958878578 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1-like [Jatropha curcas]
11 Hb_000345_060 0.3014958068 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
12 Hb_003536_090 0.3026643588 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_000109_230 0.3098084991 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001377_280 0.3120755499 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
15 Hb_000375_140 0.3133316194 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
16 Hb_000313_330 0.3136480825 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
17 Hb_004785_050 0.3172789946 - - PREDICTED: serine decarboxylase [Jatropha curcas]
18 Hb_033870_010 0.3206686956 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
19 Hb_000122_120 0.3230999222 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
20 Hb_014720_100 0.3232273854 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_033546_020 Hb_033546_020 Hb_001377_300 Hb_001377_300 Hb_033546_020--Hb_001377_300 Hb_001998_170 Hb_001998_170 Hb_033546_020--Hb_001998_170 Hb_113084_010 Hb_113084_010 Hb_033546_020--Hb_113084_010 Hb_003906_020 Hb_003906_020 Hb_033546_020--Hb_003906_020 Hb_007889_020 Hb_007889_020 Hb_033546_020--Hb_007889_020 Hb_000311_040 Hb_000311_040 Hb_033546_020--Hb_000311_040 Hb_000375_140 Hb_000375_140 Hb_001377_300--Hb_000375_140 Hb_067118_010 Hb_067118_010 Hb_001377_300--Hb_067118_010 Hb_009222_110 Hb_009222_110 Hb_001377_300--Hb_009222_110 Hb_001488_390 Hb_001488_390 Hb_001377_300--Hb_001488_390 Hb_000684_220 Hb_000684_220 Hb_001377_300--Hb_000684_220 Hb_001999_100 Hb_001999_100 Hb_001998_170--Hb_001999_100 Hb_026527_010 Hb_026527_010 Hb_001998_170--Hb_026527_010 Hb_020805_140 Hb_020805_140 Hb_001998_170--Hb_020805_140 Hb_000062_660 Hb_000062_660 Hb_001998_170--Hb_000062_660 Hb_002760_050 Hb_002760_050 Hb_001998_170--Hb_002760_050 Hb_008699_030 Hb_008699_030 Hb_001998_170--Hb_008699_030 Hb_000122_120 Hb_000122_120 Hb_113084_010--Hb_000122_120 Hb_000668_090 Hb_000668_090 Hb_113084_010--Hb_000668_090 Hb_000035_280 Hb_000035_280 Hb_113084_010--Hb_000035_280 Hb_001001_050 Hb_001001_050 Hb_113084_010--Hb_001001_050 Hb_003098_010 Hb_003098_010 Hb_113084_010--Hb_003098_010 Hb_002641_170 Hb_002641_170 Hb_003906_020--Hb_002641_170 Hb_000345_060 Hb_000345_060 Hb_003906_020--Hb_000345_060 Hb_000635_020 Hb_000635_020 Hb_003906_020--Hb_000635_020 Hb_000995_020 Hb_000995_020 Hb_003906_020--Hb_000995_020 Hb_014720_100 Hb_014720_100 Hb_003906_020--Hb_014720_100 Hb_000367_110 Hb_000367_110 Hb_003906_020--Hb_000367_110 Hb_007889_020--Hb_001998_170 Hb_027136_020 Hb_027136_020 Hb_007889_020--Hb_027136_020 Hb_000329_260 Hb_000329_260 Hb_007889_020--Hb_000329_260 Hb_033870_010 Hb_033870_010 Hb_007889_020--Hb_033870_010 Hb_000032_050 Hb_000032_050 Hb_007889_020--Hb_000032_050 Hb_001195_410 Hb_001195_410 Hb_000311_040--Hb_001195_410 Hb_034507_040 Hb_034507_040 Hb_000311_040--Hb_034507_040 Hb_000816_190 Hb_000816_190 Hb_000311_040--Hb_000816_190 Hb_000291_160 Hb_000291_160 Hb_000311_040--Hb_000291_160 Hb_011918_010 Hb_011918_010 Hb_000311_040--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_000311_040--Hb_008185_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241306 0.0201588 0.0465004 0.603444 0.00765095 0.0071764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156101 0.0272965 0 0.00541911 0.0580442

CAGE analysis