Hb_007889_020

Information

Type -
Description -
Location Contig7889: 24362-29587
Sequence    

Annotation

kegg
ID rcu:RCOM_0811630
description hypothetical protein
nr
ID XP_002518693.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q2S2F5
description Kynurenine formamidase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=kynB PE=3 SV=1
trembl
ID B9RYA9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0811630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58203: 24669-50460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007889_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_033546_020 0.2818185855 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
3 Hb_001998_170 0.2925502355 - - BnaC07g08230D [Brassica napus]
4 Hb_027136_020 0.3052145744 - - -
5 Hb_000329_260 0.3199250803 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
6 Hb_033870_010 0.3217740064 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
7 Hb_000032_050 0.330157245 - - hypothetical protein RCOM_1691130 [Ricinus communis]
8 Hb_001828_100 0.3324186203 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
9 Hb_000307_120 0.3463745554 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
10 Hb_000345_060 0.3464321535 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
11 Hb_004158_100 0.3541345581 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
12 Hb_002572_030 0.3592242087 - - PREDICTED: diacylglycerol kinase theta [Jatropha curcas]
13 Hb_020259_020 0.3622513269 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]
14 Hb_003906_020 0.3635190953 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
15 Hb_006916_070 0.3636129325 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
16 Hb_004757_050 0.3651304462 - - -
17 Hb_014720_100 0.3664913051 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
18 Hb_118228_010 0.3687227351 - - PREDICTED: pirin-like protein [Jatropha curcas]
19 Hb_000179_120 0.3704873245 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
20 Hb_017434_080 0.3707808329 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007889_020 Hb_007889_020 Hb_033546_020 Hb_033546_020 Hb_007889_020--Hb_033546_020 Hb_001998_170 Hb_001998_170 Hb_007889_020--Hb_001998_170 Hb_027136_020 Hb_027136_020 Hb_007889_020--Hb_027136_020 Hb_000329_260 Hb_000329_260 Hb_007889_020--Hb_000329_260 Hb_033870_010 Hb_033870_010 Hb_007889_020--Hb_033870_010 Hb_000032_050 Hb_000032_050 Hb_007889_020--Hb_000032_050 Hb_001377_300 Hb_001377_300 Hb_033546_020--Hb_001377_300 Hb_033546_020--Hb_001998_170 Hb_113084_010 Hb_113084_010 Hb_033546_020--Hb_113084_010 Hb_003906_020 Hb_003906_020 Hb_033546_020--Hb_003906_020 Hb_000311_040 Hb_000311_040 Hb_033546_020--Hb_000311_040 Hb_001999_100 Hb_001999_100 Hb_001998_170--Hb_001999_100 Hb_026527_010 Hb_026527_010 Hb_001998_170--Hb_026527_010 Hb_020805_140 Hb_020805_140 Hb_001998_170--Hb_020805_140 Hb_000062_660 Hb_000062_660 Hb_001998_170--Hb_000062_660 Hb_002760_050 Hb_002760_050 Hb_001998_170--Hb_002760_050 Hb_008699_030 Hb_008699_030 Hb_001998_170--Hb_008699_030 Hb_012753_180 Hb_012753_180 Hb_027136_020--Hb_012753_180 Hb_000181_370 Hb_000181_370 Hb_027136_020--Hb_000181_370 Hb_002582_080 Hb_002582_080 Hb_027136_020--Hb_002582_080 Hb_001329_020 Hb_001329_020 Hb_027136_020--Hb_001329_020 Hb_000358_130 Hb_000358_130 Hb_027136_020--Hb_000358_130 Hb_003536_090 Hb_003536_090 Hb_027136_020--Hb_003536_090 Hb_000329_260--Hb_033870_010 Hb_001979_030 Hb_001979_030 Hb_000329_260--Hb_001979_030 Hb_001417_080 Hb_001417_080 Hb_000329_260--Hb_001417_080 Hb_001864_090 Hb_001864_090 Hb_000329_260--Hb_001864_090 Hb_000136_160 Hb_000136_160 Hb_000329_260--Hb_000136_160 Hb_000329_260--Hb_000032_050 Hb_000895_080 Hb_000895_080 Hb_033870_010--Hb_000895_080 Hb_033870_010--Hb_000032_050 Hb_033870_010--Hb_001864_090 Hb_033870_010--Hb_001417_080 Hb_033870_010--Hb_033546_020 Hb_001922_180 Hb_001922_180 Hb_000032_050--Hb_001922_180 Hb_000445_170 Hb_000445_170 Hb_000032_050--Hb_000445_170 Hb_113739_010 Hb_113739_010 Hb_000032_050--Hb_113739_010 Hb_000109_230 Hb_000109_230 Hb_000032_050--Hb_000109_230 Hb_033354_020 Hb_033354_020 Hb_000032_050--Hb_033354_020 Hb_001828_100 Hb_001828_100 Hb_000032_050--Hb_001828_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3626 1.34159 0 8.31901 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26015 0.54999 0 0 1.10887

CAGE analysis