Hb_000895_080

Information

Type -
Description -
Location Contig895: 110942-118720
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05990g
description POPTRDRAFT_877603; hypothetical protein
nr
ID XP_012065718.1
description PREDICTED: acyl-CoA--sterol O-acyltransferase 1-like [Jatropha curcas]
swissprot
ID Q9SV07
description Acyl-CoA--sterol O-acyltransferase 1 OS=Arabidopsis thaliana GN=ASAT1 PE=1 SV=1
trembl
ID B9HNV0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05990g PE=4 SV=1
Gene Ontology
ID GO:0047196
description acyl- --sterol o-acyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61749: 110905-111228 , PASA_asmbl_61750: 111544-112041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000895_080 0.0 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1-like [Jatropha curcas]
2 Hb_033870_010 0.2310903166 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
3 Hb_000032_050 0.2687119221 - - hypothetical protein RCOM_1691130 [Ricinus communis]
4 Hb_033546_020 0.2958878578 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
5 Hb_007273_020 0.3097734823 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
6 Hb_001377_280 0.3103878691 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
7 Hb_113739_010 0.3119409651 - - hypothetical protein JCGZ_06379 [Jatropha curcas]
8 Hb_002228_100 0.3135049843 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_003206_100 0.3148863177 - - -
10 Hb_009051_020 0.3235186621 - - Thioredoxin O1 [Morus notabilis]
11 Hb_000137_070 0.3269602319 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
12 Hb_034482_010 0.3277276642 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000343_140 0.3283588358 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
14 Hb_001922_180 0.3286487287 - - hevamine-A precursor, putative [Ricinus communis]
15 Hb_000445_170 0.3291041229 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
16 Hb_001205_160 0.330338078 - - hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
17 Hb_000311_040 0.3352348299 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
18 Hb_182516_010 0.3409269256 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
19 Hb_004846_200 0.3422190184 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
20 Hb_002656_020 0.3445861036 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000895_080 Hb_000895_080 Hb_033870_010 Hb_033870_010 Hb_000895_080--Hb_033870_010 Hb_000032_050 Hb_000032_050 Hb_000895_080--Hb_000032_050 Hb_033546_020 Hb_033546_020 Hb_000895_080--Hb_033546_020 Hb_007273_020 Hb_007273_020 Hb_000895_080--Hb_007273_020 Hb_001377_280 Hb_001377_280 Hb_000895_080--Hb_001377_280 Hb_113739_010 Hb_113739_010 Hb_000895_080--Hb_113739_010 Hb_000329_260 Hb_000329_260 Hb_033870_010--Hb_000329_260 Hb_033870_010--Hb_000032_050 Hb_001864_090 Hb_001864_090 Hb_033870_010--Hb_001864_090 Hb_001417_080 Hb_001417_080 Hb_033870_010--Hb_001417_080 Hb_033870_010--Hb_033546_020 Hb_001922_180 Hb_001922_180 Hb_000032_050--Hb_001922_180 Hb_000445_170 Hb_000445_170 Hb_000032_050--Hb_000445_170 Hb_000032_050--Hb_113739_010 Hb_000109_230 Hb_000109_230 Hb_000032_050--Hb_000109_230 Hb_033354_020 Hb_033354_020 Hb_000032_050--Hb_033354_020 Hb_001828_100 Hb_001828_100 Hb_000032_050--Hb_001828_100 Hb_001377_300 Hb_001377_300 Hb_033546_020--Hb_001377_300 Hb_001998_170 Hb_001998_170 Hb_033546_020--Hb_001998_170 Hb_113084_010 Hb_113084_010 Hb_033546_020--Hb_113084_010 Hb_003906_020 Hb_003906_020 Hb_033546_020--Hb_003906_020 Hb_007889_020 Hb_007889_020 Hb_033546_020--Hb_007889_020 Hb_000311_040 Hb_000311_040 Hb_033546_020--Hb_000311_040 Hb_000292_080 Hb_000292_080 Hb_007273_020--Hb_000292_080 Hb_002656_020 Hb_002656_020 Hb_007273_020--Hb_002656_020 Hb_009051_020 Hb_009051_020 Hb_007273_020--Hb_009051_020 Hb_011200_010 Hb_011200_010 Hb_007273_020--Hb_011200_010 Hb_003206_100 Hb_003206_100 Hb_007273_020--Hb_003206_100 Hb_001517_030 Hb_001517_030 Hb_007273_020--Hb_001517_030 Hb_000343_140 Hb_000343_140 Hb_001377_280--Hb_000343_140 Hb_001377_280--Hb_033354_020 Hb_001377_280--Hb_000311_040 Hb_183610_010 Hb_183610_010 Hb_001377_280--Hb_183610_010 Hb_004453_070 Hb_004453_070 Hb_001377_280--Hb_004453_070 Hb_004117_120 Hb_004117_120 Hb_001377_280--Hb_004117_120 Hb_000137_070 Hb_000137_070 Hb_113739_010--Hb_000137_070 Hb_182516_010 Hb_182516_010 Hb_113739_010--Hb_182516_010 Hb_000390_200 Hb_000390_200 Hb_113739_010--Hb_000390_200 Hb_068804_150 Hb_068804_150 Hb_113739_010--Hb_068804_150 Hb_000139_330 Hb_000139_330 Hb_113739_010--Hb_000139_330 Hb_002603_130 Hb_002603_130 Hb_113739_010--Hb_002603_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4428 0.10962 0.777156 25.1608 0.152006 6.27026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4621 1.77657 2.03136 0.112329 0.710317

CAGE analysis