Hb_000181_370

Information

Type -
Description -
Location Contig181: 340393-341479
Sequence    

Annotation

kegg
ID rcu:RCOM_0821630
description hypothetical protein
nr
ID XP_002525821.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q96386
description Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1
trembl
ID B9SIK2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0821630 PE=4 SV=1
Gene Ontology
ID GO:0005622
description metallothionein-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001405_240 0.1844398468 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000984_040 0.2157417853 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_000032_160 0.2312224206 - - conserved hypothetical protein [Ricinus communis]
5 Hb_177587_010 0.2332859796 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
6 Hb_027136_020 0.2381889141 - - -
7 Hb_000334_040 0.2396504629 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
8 Hb_050229_030 0.2414092311 - - unnamed protein product [Coffea canephora]
9 Hb_000358_130 0.24222297 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
10 Hb_001396_080 0.2452796878 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009466_040 0.2457879249 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
12 Hb_000614_310 0.2485546561 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002820_100 0.2510533301 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
14 Hb_005183_020 0.2540810588 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
15 Hb_000318_070 0.2543583878 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
16 Hb_170674_020 0.2545267912 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
17 Hb_001998_160 0.2545480294 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
18 Hb_013399_040 0.2550148766 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
19 Hb_000327_050 0.2555611236 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
20 Hb_009501_010 0.2561586261 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_000181_370 Hb_000181_370 Hb_001405_240 Hb_001405_240 Hb_000181_370--Hb_001405_240 Hb_000984_040 Hb_000984_040 Hb_000181_370--Hb_000984_040 Hb_000032_160 Hb_000032_160 Hb_000181_370--Hb_000032_160 Hb_177587_010 Hb_177587_010 Hb_000181_370--Hb_177587_010 Hb_027136_020 Hb_027136_020 Hb_000181_370--Hb_027136_020 Hb_000334_040 Hb_000334_040 Hb_000181_370--Hb_000334_040 Hb_001405_240--Hb_000984_040 Hb_000501_090 Hb_000501_090 Hb_001405_240--Hb_000501_090 Hb_001645_100 Hb_001645_100 Hb_001405_240--Hb_001645_100 Hb_002053_070 Hb_002053_070 Hb_001405_240--Hb_002053_070 Hb_015026_010 Hb_015026_010 Hb_001405_240--Hb_015026_010 Hb_008971_020 Hb_008971_020 Hb_000984_040--Hb_008971_020 Hb_014214_010 Hb_014214_010 Hb_000984_040--Hb_014214_010 Hb_002411_070 Hb_002411_070 Hb_000984_040--Hb_002411_070 Hb_000433_060 Hb_000433_060 Hb_000984_040--Hb_000433_060 Hb_000976_090 Hb_000976_090 Hb_000984_040--Hb_000976_090 Hb_005183_020 Hb_005183_020 Hb_000032_160--Hb_005183_020 Hb_013399_040 Hb_013399_040 Hb_000032_160--Hb_013399_040 Hb_170674_020 Hb_170674_020 Hb_000032_160--Hb_170674_020 Hb_000327_050 Hb_000327_050 Hb_000032_160--Hb_000327_050 Hb_000318_070 Hb_000318_070 Hb_000032_160--Hb_000318_070 Hb_001269_440 Hb_001269_440 Hb_000032_160--Hb_001269_440 Hb_177587_010--Hb_000334_040 Hb_050229_030 Hb_050229_030 Hb_177587_010--Hb_050229_030 Hb_009466_040 Hb_009466_040 Hb_177587_010--Hb_009466_040 Hb_001013_070 Hb_001013_070 Hb_177587_010--Hb_001013_070 Hb_177587_010--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_177587_010--Hb_002304_120 Hb_012753_180 Hb_012753_180 Hb_027136_020--Hb_012753_180 Hb_002582_080 Hb_002582_080 Hb_027136_020--Hb_002582_080 Hb_001329_020 Hb_001329_020 Hb_027136_020--Hb_001329_020 Hb_000358_130 Hb_000358_130 Hb_027136_020--Hb_000358_130 Hb_003536_090 Hb_003536_090 Hb_027136_020--Hb_003536_090 Hb_000334_040--Hb_050229_030 Hb_000334_040--Hb_009466_040 Hb_000334_040--Hb_000976_090 Hb_000334_040--Hb_001645_100 Hb_000334_040--Hb_002053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.311871 0 2.31352 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304437 0 0 0.0654259 0

CAGE analysis