Hb_008971_020

Information

Type -
Description -
Location Contig8971: 48588-49071
Sequence    

Annotation

kegg
ID egr:104414349
description UPF0481 protein At3g47200-like
nr
ID XP_010023722.1
description PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A067D904
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038625mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008971_020 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis]
2 Hb_001104_250 0.1390167347 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
3 Hb_003839_060 0.1497833455 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
4 Hb_000769_050 0.1517340034 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
5 Hb_002548_010 0.1527671669 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
6 Hb_003442_020 0.1539163151 - - ccd1, putative [Ricinus communis]
7 Hb_123887_010 0.1561194752 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
8 Hb_174644_010 0.1631715214 - - -
9 Hb_000152_090 0.1651448561 - - unnamed protein product [Coffea canephora]
10 Hb_023536_020 0.1662703548 - - Nicotianamine synthase, putative [Ricinus communis]
11 Hb_006187_020 0.16771175 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
12 Hb_000167_090 0.1720412398 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001766_140 0.1739699446 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
14 Hb_001948_100 0.1783489399 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010261_050 0.1792089323 - - DNA binding protein, putative [Ricinus communis]
16 Hb_002374_070 0.179438102 - - amino acid transporter, putative [Ricinus communis]
17 Hb_003337_010 0.180036308 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000433_060 0.1824920604 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
19 Hb_000984_040 0.1828628602 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_000373_110 0.1862176359 - - Nodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_008971_020 Hb_008971_020 Hb_001104_250 Hb_001104_250 Hb_008971_020--Hb_001104_250 Hb_003839_060 Hb_003839_060 Hb_008971_020--Hb_003839_060 Hb_000769_050 Hb_000769_050 Hb_008971_020--Hb_000769_050 Hb_002548_010 Hb_002548_010 Hb_008971_020--Hb_002548_010 Hb_003442_020 Hb_003442_020 Hb_008971_020--Hb_003442_020 Hb_123887_010 Hb_123887_010 Hb_008971_020--Hb_123887_010 Hb_001104_250--Hb_002548_010 Hb_001104_250--Hb_000769_050 Hb_001104_250--Hb_003839_060 Hb_001104_250--Hb_003442_020 Hb_001104_250--Hb_123887_010 Hb_000152_090 Hb_000152_090 Hb_001104_250--Hb_000152_090 Hb_174644_010 Hb_174644_010 Hb_003839_060--Hb_174644_010 Hb_003839_060--Hb_003442_020 Hb_003839_060--Hb_123887_010 Hb_023536_020 Hb_023536_020 Hb_003839_060--Hb_023536_020 Hb_003777_100 Hb_003777_100 Hb_003839_060--Hb_003777_100 Hb_000769_050--Hb_002548_010 Hb_000769_050--Hb_123887_010 Hb_000769_050--Hb_000152_090 Hb_000167_090 Hb_000167_090 Hb_000769_050--Hb_000167_090 Hb_000769_050--Hb_003442_020 Hb_002548_010--Hb_000167_090 Hb_000203_090 Hb_000203_090 Hb_002548_010--Hb_000203_090 Hb_002548_010--Hb_000152_090 Hb_182625_010 Hb_182625_010 Hb_002548_010--Hb_182625_010 Hb_010261_050 Hb_010261_050 Hb_003442_020--Hb_010261_050 Hb_003337_010 Hb_003337_010 Hb_003442_020--Hb_003337_010 Hb_003442_020--Hb_123887_010 Hb_003442_020--Hb_003777_100 Hb_123887_010--Hb_010261_050 Hb_123887_010--Hb_174644_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.26943 0.43497 5.21578 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.310687 0 0 0 0

CAGE analysis