Hb_000984_040

Information

Type -
Description -
Location Contig984: 77447-79228
Sequence    

Annotation

kegg
ID rcu:RCOM_1584350
description multidrug resistance pump, putative
nr
ID XP_002510003.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q5RFD2
description Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1
trembl
ID B9R6R0
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1584350 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64531: 77943-78381 , PASA_asmbl_64532: 78702-79251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_040 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_001405_240 0.1779711303 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008971_020 0.1828628602 - - PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis]
4 Hb_014214_010 0.1925547773 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
5 Hb_002411_070 0.2004500237 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
6 Hb_000433_060 0.203757035 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
7 Hb_000976_090 0.2039732085 - - -
8 Hb_004125_080 0.2048538968 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
9 Hb_002053_070 0.2058806652 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
10 Hb_023536_020 0.2085240223 - - Nicotianamine synthase, putative [Ricinus communis]
11 Hb_002374_070 0.2094946003 - - amino acid transporter, putative [Ricinus communis]
12 Hb_000373_110 0.2095429003 - - Nodulin, putative [Ricinus communis]
13 Hb_001808_010 0.2103591101 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
14 Hb_174644_010 0.2154411727 - - -
15 Hb_000181_370 0.2157417853 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000056_180 0.2163047898 - - -
17 Hb_000061_080 0.2165072815 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
18 Hb_003059_060 0.2169207472 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
19 Hb_000245_070 0.2172354902 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
20 Hb_156850_040 0.2174755879 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_040 Hb_000984_040 Hb_001405_240 Hb_001405_240 Hb_000984_040--Hb_001405_240 Hb_008971_020 Hb_008971_020 Hb_000984_040--Hb_008971_020 Hb_014214_010 Hb_014214_010 Hb_000984_040--Hb_014214_010 Hb_002411_070 Hb_002411_070 Hb_000984_040--Hb_002411_070 Hb_000433_060 Hb_000433_060 Hb_000984_040--Hb_000433_060 Hb_000976_090 Hb_000976_090 Hb_000984_040--Hb_000976_090 Hb_000181_370 Hb_000181_370 Hb_001405_240--Hb_000181_370 Hb_000501_090 Hb_000501_090 Hb_001405_240--Hb_000501_090 Hb_001645_100 Hb_001645_100 Hb_001405_240--Hb_001645_100 Hb_002053_070 Hb_002053_070 Hb_001405_240--Hb_002053_070 Hb_015026_010 Hb_015026_010 Hb_001405_240--Hb_015026_010 Hb_001104_250 Hb_001104_250 Hb_008971_020--Hb_001104_250 Hb_003839_060 Hb_003839_060 Hb_008971_020--Hb_003839_060 Hb_000769_050 Hb_000769_050 Hb_008971_020--Hb_000769_050 Hb_002548_010 Hb_002548_010 Hb_008971_020--Hb_002548_010 Hb_003442_020 Hb_003442_020 Hb_008971_020--Hb_003442_020 Hb_123887_010 Hb_123887_010 Hb_008971_020--Hb_123887_010 Hb_001808_010 Hb_001808_010 Hb_014214_010--Hb_001808_010 Hb_014214_010--Hb_000433_060 Hb_014214_010--Hb_000976_090 Hb_014214_010--Hb_002053_070 Hb_000903_050 Hb_000903_050 Hb_014214_010--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_014214_010--Hb_005306_200 Hb_004125_080 Hb_004125_080 Hb_002411_070--Hb_004125_080 Hb_000373_110 Hb_000373_110 Hb_002411_070--Hb_000373_110 Hb_023536_020 Hb_023536_020 Hb_002411_070--Hb_023536_020 Hb_006590_040 Hb_006590_040 Hb_002411_070--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_002411_070--Hb_002374_070 Hb_002116_020 Hb_002116_020 Hb_002411_070--Hb_002116_020 Hb_174644_010 Hb_174644_010 Hb_000433_060--Hb_174644_010 Hb_031022_040 Hb_031022_040 Hb_000433_060--Hb_031022_040 Hb_000433_060--Hb_000903_050 Hb_000433_060--Hb_005306_200 Hb_000433_060--Hb_001808_010 Hb_000976_090--Hb_002053_070 Hb_009466_040 Hb_009466_040 Hb_000976_090--Hb_009466_040 Hb_000056_180 Hb_000056_180 Hb_000976_090--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_000976_090--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000976_090--Hb_003059_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0122537 0.40369 0.00960616 1.07253 0.0114741 0.0120834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0836693 0 0 0.017495 0

CAGE analysis