Hb_000976_090

Information

Type -
Description -
Location Contig976: 114591-117863
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64050: 114612-117697 , PASA_asmbl_64052: 116725-117078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_090 0.0 - - -
2 Hb_002053_070 0.0155800496 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
3 Hb_014214_010 0.0794859955 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
4 Hb_009466_040 0.081834878 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
5 Hb_000056_180 0.0982448383 - - -
6 Hb_000061_080 0.098543271 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
7 Hb_003059_060 0.0992512866 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
8 Hb_031022_040 0.1028191988 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
9 Hb_028390_020 0.1031037154 - - -
10 Hb_000099_180 0.1044479402 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
11 Hb_000433_060 0.1074701894 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
12 Hb_000903_050 0.1130335507 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
13 Hb_005306_200 0.114416589 - - -
14 Hb_001808_010 0.1159810364 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
15 Hb_000334_040 0.1167546503 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
16 Hb_005511_070 0.1167699923 - - -
17 Hb_058095_010 0.1171142351 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
18 Hb_000115_260 0.1176337774 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
19 Hb_012760_080 0.1244085982 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000259_100 0.1309873831 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000976_090 Hb_000976_090 Hb_002053_070 Hb_002053_070 Hb_000976_090--Hb_002053_070 Hb_014214_010 Hb_014214_010 Hb_000976_090--Hb_014214_010 Hb_009466_040 Hb_009466_040 Hb_000976_090--Hb_009466_040 Hb_000056_180 Hb_000056_180 Hb_000976_090--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_000976_090--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000976_090--Hb_003059_060 Hb_002053_070--Hb_014214_010 Hb_002053_070--Hb_009466_040 Hb_002053_070--Hb_000056_180 Hb_002053_070--Hb_000061_080 Hb_031022_040 Hb_031022_040 Hb_002053_070--Hb_031022_040 Hb_001808_010 Hb_001808_010 Hb_014214_010--Hb_001808_010 Hb_000433_060 Hb_000433_060 Hb_014214_010--Hb_000433_060 Hb_000903_050 Hb_000903_050 Hb_014214_010--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_014214_010--Hb_005306_200 Hb_000334_040 Hb_000334_040 Hb_009466_040--Hb_000334_040 Hb_177587_010 Hb_177587_010 Hb_009466_040--Hb_177587_010 Hb_050229_030 Hb_050229_030 Hb_009466_040--Hb_050229_030 Hb_001645_100 Hb_001645_100 Hb_009466_040--Hb_001645_100 Hb_000056_180--Hb_000061_080 Hb_000056_180--Hb_003059_060 Hb_028390_020 Hb_028390_020 Hb_000056_180--Hb_028390_020 Hb_000099_180 Hb_000099_180 Hb_000056_180--Hb_000099_180 Hb_000056_180--Hb_031022_040 Hb_058095_010 Hb_058095_010 Hb_000056_180--Hb_058095_010 Hb_000061_080--Hb_003059_060 Hb_000061_080--Hb_028390_020 Hb_000061_080--Hb_000099_180 Hb_000061_080--Hb_031022_040 Hb_000061_080--Hb_058095_010 Hb_003059_060--Hb_028390_020 Hb_003059_060--Hb_000099_180 Hb_003059_060--Hb_031022_040 Hb_003059_060--Hb_058095_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.39885 0 9.22522 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.246016 0

CAGE analysis