Hb_002053_070

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2053: 80022-83045
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16050g
description POPTRDRAFT_806176; WRKY transcription factor 35 family protein
nr
ID XP_011005315.1
description PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
swissprot
ID Q9SA80
description Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2
trembl
ID B9I0X2
description WRKY transcription factor 35 family protein OS=Populus trichocarpa GN=POPTR_0011s16050g PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_070 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
2 Hb_000976_090 0.0155800496 - - -
3 Hb_014214_010 0.080409655 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
4 Hb_009466_040 0.0857050375 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
5 Hb_000056_180 0.1097075152 - - -
6 Hb_000061_080 0.110299258 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
7 Hb_031022_040 0.1109616801 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
8 Hb_003059_060 0.1113904446 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
9 Hb_001808_010 0.1129057765 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
10 Hb_000433_060 0.114158783 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
11 Hb_028390_020 0.116110406 - - -
12 Hb_000099_180 0.1176148505 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
13 Hb_000903_050 0.1185851979 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
14 Hb_000334_040 0.1194994093 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
15 Hb_005306_200 0.1196991519 - - -
16 Hb_005511_070 0.1216221481 - - -
17 Hb_000115_260 0.1223357503 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
18 Hb_058095_010 0.1308851875 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
19 Hb_000259_100 0.133761714 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_001645_100 0.1341888298 - - -

Gene co-expression network

sample Hb_002053_070 Hb_002053_070 Hb_000976_090 Hb_000976_090 Hb_002053_070--Hb_000976_090 Hb_014214_010 Hb_014214_010 Hb_002053_070--Hb_014214_010 Hb_009466_040 Hb_009466_040 Hb_002053_070--Hb_009466_040 Hb_000056_180 Hb_000056_180 Hb_002053_070--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_002053_070--Hb_000061_080 Hb_031022_040 Hb_031022_040 Hb_002053_070--Hb_031022_040 Hb_000976_090--Hb_014214_010 Hb_000976_090--Hb_009466_040 Hb_000976_090--Hb_000056_180 Hb_000976_090--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000976_090--Hb_003059_060 Hb_001808_010 Hb_001808_010 Hb_014214_010--Hb_001808_010 Hb_000433_060 Hb_000433_060 Hb_014214_010--Hb_000433_060 Hb_000903_050 Hb_000903_050 Hb_014214_010--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_014214_010--Hb_005306_200 Hb_000334_040 Hb_000334_040 Hb_009466_040--Hb_000334_040 Hb_177587_010 Hb_177587_010 Hb_009466_040--Hb_177587_010 Hb_050229_030 Hb_050229_030 Hb_009466_040--Hb_050229_030 Hb_001645_100 Hb_001645_100 Hb_009466_040--Hb_001645_100 Hb_000056_180--Hb_000061_080 Hb_000056_180--Hb_003059_060 Hb_028390_020 Hb_028390_020 Hb_000056_180--Hb_028390_020 Hb_000099_180 Hb_000099_180 Hb_000056_180--Hb_000099_180 Hb_000056_180--Hb_031022_040 Hb_058095_010 Hb_058095_010 Hb_000056_180--Hb_058095_010 Hb_000061_080--Hb_003059_060 Hb_000061_080--Hb_028390_020 Hb_000061_080--Hb_000099_180 Hb_000061_080--Hb_031022_040 Hb_000061_080--Hb_058095_010 Hb_031022_040--Hb_000903_050 Hb_031022_040--Hb_005306_200 Hb_005511_070 Hb_005511_070 Hb_031022_040--Hb_005511_070 Hb_000115_260 Hb_000115_260 Hb_031022_040--Hb_000115_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.10357 0 0.268132 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00893307 0

CAGE analysis