Hb_000334_040

Information

Type -
Description -
Location Contig334: 21001-21216
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41860g
description hypothetical protein
nr
ID XP_006370346.1
description hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9N569
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41860g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_040 0.0 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
2 Hb_050229_030 0.0284597333 - - unnamed protein product [Coffea canephora]
3 Hb_177587_010 0.0306373477 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
4 Hb_009466_040 0.0355438341 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
5 Hb_000976_090 0.1167546503 - - -
6 Hb_001645_100 0.1179496675 - - -
7 Hb_002053_070 0.1194994093 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
8 Hb_001013_070 0.1261748396 - - -
9 Hb_008385_010 0.1396507012 - - sulfate transporter, putative [Ricinus communis]
10 Hb_001147_120 0.1435688953 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
11 Hb_001825_030 0.1436419657 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
12 Hb_000284_090 0.1436638549 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_000321_020 0.1448696152 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
14 Hb_002304_120 0.1458045086 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012760_080 0.1462742315 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000327_050 0.1472472776 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
17 Hb_013399_040 0.1488190774 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
18 Hb_058095_010 0.1491707234 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
19 Hb_000086_160 0.1509997508 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
20 Hb_170674_020 0.1513305801 - - hypothetical protein JCGZ_23768 [Jatropha curcas]

Gene co-expression network

sample Hb_000334_040 Hb_000334_040 Hb_050229_030 Hb_050229_030 Hb_000334_040--Hb_050229_030 Hb_177587_010 Hb_177587_010 Hb_000334_040--Hb_177587_010 Hb_009466_040 Hb_009466_040 Hb_000334_040--Hb_009466_040 Hb_000976_090 Hb_000976_090 Hb_000334_040--Hb_000976_090 Hb_001645_100 Hb_001645_100 Hb_000334_040--Hb_001645_100 Hb_002053_070 Hb_002053_070 Hb_000334_040--Hb_002053_070 Hb_050229_030--Hb_177587_010 Hb_050229_030--Hb_009466_040 Hb_050229_030--Hb_001645_100 Hb_001013_070 Hb_001013_070 Hb_050229_030--Hb_001013_070 Hb_008385_010 Hb_008385_010 Hb_050229_030--Hb_008385_010 Hb_177587_010--Hb_009466_040 Hb_177587_010--Hb_001013_070 Hb_000327_050 Hb_000327_050 Hb_177587_010--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_177587_010--Hb_002304_120 Hb_009466_040--Hb_000976_090 Hb_009466_040--Hb_002053_070 Hb_009466_040--Hb_001645_100 Hb_000976_090--Hb_002053_070 Hb_014214_010 Hb_014214_010 Hb_000976_090--Hb_014214_010 Hb_000056_180 Hb_000056_180 Hb_000976_090--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_000976_090--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000976_090--Hb_003059_060 Hb_000501_090 Hb_000501_090 Hb_001645_100--Hb_000501_090 Hb_015026_010 Hb_015026_010 Hb_001645_100--Hb_015026_010 Hb_000146_100 Hb_000146_100 Hb_001645_100--Hb_000146_100 Hb_002053_070--Hb_014214_010 Hb_002053_070--Hb_000056_180 Hb_002053_070--Hb_000061_080 Hb_031022_040 Hb_031022_040 Hb_002053_070--Hb_031022_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.56774 0 7.79471 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.396361 0

CAGE analysis